SUNDAY |
2:00 pm - 9:00 pm | Arrival and Check-in |
6:00 pm | Dinner |
7:30 pm - 9:30 pm | Functional Genomics I: Developmental Genomics |
| Discussion Leader: Eric Siggia (Rockefeller University) |
7:30 pm - 8:10 pm | Ulrike Gaul (Rockefeller University)
"Reparsing segmentation - transcriptional and translational control of early body patterning in drosophila" |
8:10 pm - 8:50 pm | Alan Michelson (Harvard University).
"An integrated genomic approach to the transcriptional regulation of mesoderm development in Drosophila" |
8:50 pm - 9:30 pm | Chris Burge (MIT)
"Prediction of vertebrate microRNA targets" |
MONDAY |
7:30 am - 8:30 am | Breakfast |
9:00 am - 12:30 pm | Proteins and Proteomes I: Predicting protein interactions |
| Discussion Leader: Cyrus Chothia (MRC Laboratory of Molecular Biology) |
9:00 am - 9:45 am | Joël Janin (University of Paris)
"Principles of Protein-Protein Recognition" |
9:45 am - 10:15 am | Coffee Break / Photo (10:00) |
10:15 am - 11:00 am | Jeffrey J. Gray (Johns Hopkins University)
"The Prediction of the Structure of Protein-Protein Recognition Sites" |
11:00 am - 11:45 am | Siarhei Maslau (MRC Laboratory of Molecular Biology)
"The Formation of Novel Protein Functions by Domain Combinations" |
11:45 am - 12:30 pm | Andrew Emili (University of Toronto)
"Interactomics: What Proteomics Can Teach Us About Bacterial Protein Biology" |
12:30 pm | Lunch |
1:30 pm - 4:00 pm | Free Time |
4:00 pm - 6:00 pm | Poster Session I |
6:00 pm | Dinner |
7:30 pm - 9:30 pm | Functional Genomics II: Approaches to high throughput genetic screening and phenotyping |
| Discussion Leader: Kevin White (Yale University) |
7:30 pm - 8:10 pm | Fabio Piano (NYU)
"Automated phenotypic screening and clustering in C. elegans" |
8:10 pm - 8:50 pm | Amy Kiger (UCSD)
"Identification of genetic and biochemical pathways in Drosophila using automated imaging and RNAi" |
8:50 pm - 9:30 pm | Frank Buchholz (Max Planck Institute)
"RNAi screening in Mammalian Cells with esiRNA" |
TUESDAY |
7:30 am - 8:30 am | Breakfast |
9:00 am - 12:30 pm | Evolution of genome complexity |
| Discussion Leader: Eugene Koonin (NCBI) |
9:00 am - 9:45 am | Chris Adami (Caltech)
"Inferring the complexity of genes from their sequences" |
9:45 am - 10:30 am | Arcady Mushegian (Stowers Insitute)
"Similarity measures and similarity searches in genome-wide numeric data sets" |
10:30 am - 11:00 am | Coffee Break |
11:00 am - 11:45 am | Hunter Fraser (UC Berkeley)
"Evolution of interactions and complexity: a genomic perspective" |
11:45 am - 12:30 pm | I. King Jordan (NCBI)
"Evolution of amino acid composition and protein complexity" |
12:30 pm | Lunch |
1:30 pm - 4:00 pm | Free Time |
4:00 pm - 6:00 pm | Poster Session II |
6:00 pm | Dinner |
7:30 pm - 9:30 pm | Evolution and Biodiversity |
| Discussion Leader: Doug Brutlag (Stanford University) |
7:30 pm - 8:10 pm | Ed Delong (MIT)
"Exploring the marine microbial world, from genomes to biomes" |
8:10 pm - 8:50 pm | Bernard Moret (U. of New Mexico)
"Phylogenetic methods for building the tree of life" |
8:50 pm - 9:30 pm | Phil Bourne (UCSD)
"Evolution as measured by numbers of protein folds" |
WEDNESDAY |
7:30 am - 8:30 am | Breakfast |
9:00 am - 12:30 pm | Proteins & Proteomes II: Macromolecular complexes |
| Discussion Leader: Peer Bork (EMBL) |
9:00 am - 9:45 am | Andrey Rzhetsky (Columbia University)
"On distributed thinking about molecular networks" |
9:45 am - 10:30 am | Archilleas Frangakis (EMBL) |
10:30 am - 11:00 am | Coffee Break |
11:00 am - 11:45 am | Giulio Superto-Furga (Cellzome) |
11:45 am - 12:30 pm | Nevan Krogan (Best Institute) |
12:30 pm | Lunch |
1:30 pm - 4:00 pm | Free Time |
4:00 pm - 6:00 pm | Poster Session III |
6:00 pm | Dinner |
7:30 pm - 9:30 pm | Comparative genomics, microevolution, neutralism and selection |
| Discussion Leader: Yoav Gilad (Brown University) |
7:30 pm - 8:10 pm | Tony Long (UC Irvine)
"Thousands of flies, hundreds of SNPs, Notch signaling, and the dissection of a complex trait in the wild" |
8:10 pm - 8:50 pm | Michael Eisen (University of California, Berkeley)
"Understanding and Exploiting the Evolution of Regulatory Sequences" |
8:50 pm - 9:30 pm | Greg Gibson (NCSU)
"The Quantitative Genetics of Transcription" |
THURSDAY |
7:30 am - 8:30 am | Breakfast |
9:00 am - 12:30 pm | Functional Genomics III: Chemical Genomics |
| Discussion Leader: Joel Bader (Johns Hopkins University) |
9:00 am - 9:45 am | Ulrike Eggert (Harvard University)
"Parallel chemical genetic and genome-wide RNAi screens" |
9:45 am - 10:30 am | Guri Giaever (Stanford University)
"Chemical genetics in yeast" |
10:30 am - 11:00 am | Coffee Break |
11:00 am - 11:45 am | Randall Peterson (Harvard University)
"Zebrafish chemical genetics - probing differentiation and patterning in the intact vertebrate" |
11:45 am - 12:30 pm | Timothy Gardner (Boston University)
"Reverse engineering pathways from chemical genomics screens" |
12:30 pm | Lunch |
1:30 pm - 4:00 pm | Free Time |
4:00 pm - 6:00 pm | Poster Session (if needed) |
6:00 pm | Dinner |
7:00 pm - 7:30 pm | Business Session |
7:30 pm - 9:30 pm | Comparative Functional Genomics |
| Discussion Leader: Inna Dubchak (Lawrence Berkeley National Lab) |
7:30 pm - 8:10 pm | Dan Rokhsar (UC Berkeley, Joint Genome Institute)
"Natural experiments in whole genome duplication" |
8:10 pm - 8:50 pm | Dario Boffelli (Lawrence Berkeley National Lab)
"Comparative genomics at the vertebrate extremes" |
8:50 pm - 9:30 pm | Adam Arkin (UC Berkeley, Lawrence Berkeley National Lab)
"Comparative Analysis of Microbial Stress Responses" |
FRIDAY |
7:30 am - 8:30 am | Breakfast |
9:00 am | Depart |