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Conference Program
 
Molecular Basis of Microbial One-Carbon Metabolism
July 20-25, 2008
Bates College
Lewiston, ME

One-carbon (C-1) compounds play a central role in microbial metabolism. C-1 compounds include methane, carbon monoxide, CO2, and methanol as well as coenzyme-bound one-carbon compounds (methyl-B12, CH3-H4folate, etc). Such compounds are of broad global importance because several C-1 compounds (e.g., CH4) are important energy sources, some (e.g., CO2 and CH4 ) are potent greenhouse gases, and others (e.g., CH2Cl2) are xenobiotics. They are central in pathways of energy metabolism and carbon fixation by microbes and many are of industrial interest. Research on the pathways of one-carbon metabolism has added greatly to our understanding of evolution, structural biology, enzyme mechanisms, gene regulation, ecology, and applied biology. The 2008 meeting will include recent important findings in the following areas : (a) genomics, metagenomics, and proteomic studies that have expanded our understanding of autotrophy and C-1 metabolism and the evolution of these pathways; (b) redox regulation of carbon cycles and the interrelationship between the carbon cycle and other biogeochemical cycles (sulfur, nitrogen, oxygen); (c) novel pathways for carbon assimilation; (d) biotechnology related to C-1 metabolism; (e) novel enzyme mechanisms including channeling of C-1 intermediates during metabolism; and (f) the relationship between metal homeostasis and the global carbon cycle. The conference has a diverse and gender-balanced slate of speakers and session leaders. The wide variety of disciplines brought to the study of C-1 metabolism make the field an excellent one in which to train young researchers.


Contributors
Coy Laboratory Products, Inc.
Department of Energy
Mitsubishi Gas Chemical Company
NASA Astrobiology Institute
U.S. Department of Agriculture

SUNDAY
2:00 pm - 11:00 pmArrival and Check-in
6:00 pmDinner
7:30 pm - 7:40 pmWelcome / Introductory Comments by GRC Site Staff
7:40 pm - 9:30 pm GENOMICS AND METAGENOMICS OF C-1 METABOLISM
7:40 pm - 7:45 pmDiscussion Leader: Colin Murrell (University of Warwick, UK)
7:45 pm - 8:25 pmKeynote Talk: Bärbel Friedrich (Humboldt-University, Berlin, Germany)
"The Genome Of Ralstonia eutropha H16: A Blueprint For A Lithoautotrophic Organism"
8:25 pm - 8:40 pm Discussion
8:40 pm - 9:00 pmStéphane Vuilleumier (Université Louis Pasteur)
"Methylobacterium Genome Sequences: A Blueprint For Tracing Physiological Adaptation, Ecology And Evolution In The Context Of C1 Metabolism"
9:00 pm - 9:10 pm Discussion
9:10 pm - 9:30 pm Colin Murrell (University of Warwick, UK)
"Methane Monooxygenases and Methanotrophy: A Tribute to Professor Sir Howard Dalton FRS"
9:05 pm - 9:20 pm Discussion
MONDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pm METHANOGENESIS
9:00 am - 9:05 amDiscussion Leader: Evert C. Duin (Auburn University)
9:05 am - 9:30 amMichael Chan (Ohio State University)
"Structure of the CO Dehydrogenase from Methanosarcina barkeri"
9:30 am - 9:40 am Discussion
9:40 am - 9:55 am Poster Talk 1: Kimberly Anderson (University Of Maryland Biotechnology Institute)
"A 5' UTR Regulates Expression Of Methanosarcinal Carbon Monoxide Dehydrogenase (Cdh)"
9:55 am - 10:00 amDiscussion
10:00 am Coffee Break / Group Photo
10:35 am - 10:55 amKerry Smith (Clemson University)
"Enzymology and Molecular Evolution of acetyl activating enzymes in methanogens"
10:55 am - 11:05 am Discussion
11:05 am - 11:25 am David E. Graham (University of Texas)
"2-Oxoacid metabolism in methanogenic CoM and CoB biosynthesis"
11:25 am - 11:35 am Discussion
11:35 am - 11:55 amMishtu Dey (University of Michigan)
"A Structural, Spectroscopic, and Kinetic Approach Towards Understanding the Mechanism of Biological Methane Formation"
11:55 am - 12:05 pm Discussion
12:05 pm - 12:20 pm Poster Talk 2: Gunter Wegener (Max Planck Inst for Marine Microbiology)
"Carbon assimilation in anaerobic methanotrophy - Which secrets can be revealed by stable isotope labeling?"
12:20 pm - 12:25 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pm MECHANISMS AND REGULATION OF CO2-FIXATION
7:30 pm - 7:35 pmDiscussion Leader: Joseph Krzycki (Ohio State University, Columbus)
7:35 pm - 8:10 pmKeynote Talk: F. Robert Tabita (Ohio State University, Columbus)
"Rubisco Structure and Function"
8:10 pm - 8:25 pm Discussion
8:25 pm - 8:40 pm Poster Talk 3: Andrew Dangel (Ohio State University)
"Protein-Protein Interactions between CbbR and RegA (PrrA) Transcriptional Regulators, and the Control of CO2 Fixation in Rhodobacter sphaeroides"
8:40 pm - 8:45 pm Discussion
8:45 pm - 9:05 pmHiroya Yurimoto (Kyoto University)
"Physiological role of RuMP pathway enzymes and their application"
9:05 pm - 9:15 pm Discussion
TUESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pm METHYL- AND METHANOTROPHY
9:00 am - 9:05 amDiscussion Leader: Julia Vorholt (ETH, Switzerland)
9:05 am - 9:30 amPeter F. Dunfield (New Zealand)
"What are we learning from the genomes of methanotrophs"
9:30 am - 9:40 am Discussion
9:40 am - 9:55 am Poster Talk 4: Ramakrishnan Balasubramanian (Northwestern University)
"Isolation and characterization of methanobactin from Methylococcus capsulatus (Bath) and Methylocystis sp. strain M"
9:55 am - 10:00 am Discussion
10:00 am Coffee Break
10:30 am - 10:50 amVictor Davidson (University of Mississippi Medical Center )
"New Insights into the Mechanism of Biosynthesis of the Tryptophan Tryptophylquinone Cofactor of Methylamine Dehydrogenase"
10:50 am - 11:00 am Discussion
11:00 am - 11:20 amLisa Stein (University of Alberta, Canada)
"New insights into ammonia and nitrite metabolism by methanotrophic bacteria"
11:20 am - 11:30 am Discussion
11:30 am - 11:50 amMarina Kalyuzhnaya (University of Washington)
"A novel methanol dehydrogenase: implications to the origin of methylotrophy"
11:50 am - 12:00 pm Discussion
12:00 pm - 12:20 pmAlan A. DiSpirito (Iowa State University)
"Evidence for a Diiron Catalytic Center in the Membrane-Associated Methane Monooxygenase from Methylococcus capsulatus Bath"
12:20 pm - 12:30 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pm ANAEROBIC METHANE OXIDATION
7:30 pm - 7:35 pmDiscussion Leader: Vicky Orphan (Cal Tech)
7:35 pm - 8:10 pmKeynote Talk: Samantha B. Joye (University of Georgia, Athens)
"C1-Metabolism in antarctic dry valley lakes"
8:10 pm - 8:25 pm Discussion
8:25 pm - 8:50 pmSeigo Shima (Max Planck Institute for Terrestrial Microbiology, Marburg, Germany)
"Enzymology of reverse methanogenesis"
8:50 pm - 9:00 pm Discussion
9:00 pm - 9:15 pmPoster Talk 5: Mirko Basen (Federal Institute for Geosciences and Resources)
"Microbial Physiology and biogeochemistry of anaerobic methane oxidation"
9:15 pm - 9:30 pm Discussion
WEDNESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pm C-1 METABOLISM, ECOLOGY, PHYSIOLOGY & THE ENVIRONMENT
9:00 am - 9:05 amDiscussion Leader: Thomas E. Hanson (University of Delaware, Newark)
9:05 am - 9:30 amRon Oremland (US Geological Survey)
"Chemoautotrophy coupled to arsenic metabolism: Results with extremophiles isolated from soda lakes"
9:30 am - 9:40 am Discussion
9:40 am - 10:00 am Todd O. Yeates (University of Calif. Los Angeles)
"Structural insights into the role of the carboxysome in CO2 fixation"
10:00 am - 10:10 am Discussion
10:10 am Coffee Break
10:40 am - 10:55 am Poster Talk 6: Rich Boden (University Of Warwick)
"Purification and properties of dimethylsulfide monooxygenase from Hyphomicrobium sulfonivorans"
10:55 am - 11:00 am Discussion
11:00 am - 11:20 amSteven Singer (Lawrence Livermore National Laboratory)
"Using Proteogenomics to Understand Autotrophy in an Acidophilic Microbial Community"
11:20 am - 11:30 am Discussion
11:30 am - 11:50 am Kathleen F. Scott (University of South Florida)
"Carbon isotopes to understand the biogeochemistry and enzymology of CO2 fixation"
11:50 am - 12:00 pm Discussion
12:00 pm - 12:20 pmYasuyoshi Sakai (Kyoto University)
"Syntrophic life style of C1-microorganisms on plant leaves"
12:20 pm - 12:30 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:00 pm - 7:30 pmBusiness Meeting
(Nominations for the next Vice Chair; Fill out Conference Evaluation Forms; Discuss future Site & Scheduling preferences; Election of the next Vice Chair)
7:30 pm - 9:30 pm ACETOGENESIS AND CO METABOLISM
7:30 pm - 7:35 pmDiscussion Leader: David Grahame (Uniformed Services University)
7:35 pm - 7:55 pmMichael Rother (Goethe University)
"Genetic and Physiological analysis of Carbon Monoxide Metabolism in Methanosarcina acetivorans"
7:55 pm - 8:05 pm Discussion
8:05 pm - 8:25 pmGary King (University of Maine, Walpole)
"Diversity and ecology of aerobic CO-oxidizing bacteria"
8:25 pm - 8:35 pm Discussion
8:35 pm - 8:55 pm Catherine Drennan (Massachusetts Inst. Of Technology)
"Channels and complexes involving the key proteins in acetogenesis and CO metabolism"
8:55 pm - 9:05 pm Discussion
9:05 pm - 9:25 pmVolker Müller (Goethe-University, Frankfurt, Germany)
"The Bioenergetics of Acetogenic Bacteria"
9:25 pm - 9:30 pm Discussion
THURSDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pm AUTOTROPHY AND CHEMOLITHOTROPHY
9:00 am - 9:05 amDiscussion Leader: Biswarup Mukhopadhyay (Virginia Polytechnic Institute & State University)
9:05 am - 9:30 amDan Arp (Oregon State University)
"Biochemistry and regulation of ammonia oxidation in Nitrosococcus oceani"
9:30 am - 9:40 am Discussion
9:40 am - 10:00 am Michael Russell (Jet Propulsion Labs & California Institute of Technology)
"One carbon compounds and the origin of metabolism"
10:00 am - 10:10 am Discussion
10:10 am Coffee Break
10:35 am - 10:55 amBirgit Alber (Ohio State University)
"A novel way to assimilate acetate in organisms lacking the glyoxylate cycle"
10:55 am - 11:05 am Discussion
11:05 am - 11:20 am Poster Talk 7: Rémi Peyraud (ETH Zurich, Switzerland)
"Demonstration of the pathway leading to glyoxylate generation using 13C metabolomics"
11:20 am - 11:25 am Discussion
11:25 am - 11:45 amCornelius Friedrich (University of Dortmund, Germany)
"Chemotrophic sulfur oxidizing activity by the Sox system is redox-regulated"
11:45 am - 11:55 am Discussion
11:55 am - 12:20 pmMichael S.M. Jetten (Radboud University Nijmegen, The Netherlands)
"Proteome and molecular mechanism of anaerobic ammonium oxidation by fresh water and marine anammox bacteria"
12:20 pm - 12:30 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pm C-1 PERSPECTIVES
7:30 pm - 7:40 pmDiscussion Leader: Rolf Thauer (Max Planck Institute for Terrestrial Microbiology)
7:40 pm - 8:00 pm Rathin Datta (Coskata, Inc., Warrenville, IL)
"C1 Metabolism - Path to Fuels and Chemicals"
8:00 pm - 8:10 pm Discussion
8:10 pm - 8:35 pmAlfons J.M. Stams (University of Wageningen, The Netherlands)
"One carbon compounds in sulfur biotechnology"
8:35 pm - 8:45 pm Discussion
8:45 pm - 9:15 pmLars Ljungdahl (University of Georgia)
"The anaerobic reductive acetyl-CoA pathway of CO2 fixation"
9:15 pm - 9:30 pm Discussion
FRIDAY
7:30 am - 8:30 amBreakfast
9:00 amDeparture

 
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