Conference Program
 
Post-Transcriptional Gene Regulation, The Biology Of
June 29 - July 4, 2008
Colby College
Waterville, ME
Chair:
Adrian Krainer

Vice Chair:
Lynne E. Maquat

The Gordon Research Conference on The Biology of Post-Transcriptional Gene Regulation will be the third one of a series held every other year. This conference provides an outstanding forum to present and discuss new findings about mechanisms and regulation of RNA biogenesis in normal and disease states. The emphasis will be on post-transcriptional transactions involving mRNA, but this focus will extend to transcriptional coupling, and to factors involved in translation and its control, including tRNA and microRNAs. Elucidating the basic mechanisms of post-transcriptional gene regulation will be essential to gain a full understanding of the organization, function, and evolution of the human genome, as well as of the extensive involvement of RNA-processing dysfunction in numerous genetic disorders and cancer.

The meeting will convene approximately 45 speakers representing key areas of post-transcriptional gene regulation, with a total of 150 participants. The program will consist of nine morning or evening sessions that will broadly address cutting-edge issues in the following areas: coupling between transcription and RNA processing; genomics, RNomics, and evolution of RNA-processing signals and factors; RNA splicing catalysis, regulation, and fidelity; RNA-processing dysfunctions in disease states; RNA turnover, including nonsense-mediated mRNA decay; RNA transport and localization; non-coding RNA; and translational control. In addition, small poster sessions on four late afternoons will enable all participants to contribute to, and learn about, these topics. Free early-afternoon and late-evening periods will stimulate productive, informal discussions among established and junior principal investigators, postdoctoral trainees and graduate students.


Contributors

SUNDAY
2:00 pm - 11:00 pmArrival and Check-in
6:00 pmDinner
7:30 pm - 7:45 pmWelcome / Introductory Comments by GRC Site Staff
7:45 pm - 9:30 pmTHE TRANSCRIPTION CONNECTION
Discussion Leader: Juan Valcárcel (Center for Genomic Regulation, Barcelona)
7:45 pm - 8:05 pm David Bentley (University of Colorado Health Sciences Center)
"Co-transcriptional Recruitment of Pre-mRNA Processing Factors: the Rules of Engagement"
8:05 pm - 8:15 pm Discussion
8:15 pm - 8:35 pm Thomas Gingeras (Affymetrix)
"Lesson Learned from Pervasive Transcription across the Genome: Possible Reasons and Mechanisms"
8:35 pm - 8:45 pm Discussion
8:45 pm - 9:00 pm Tracy Johnson (University of California, San Diego)
"Histone Acetylation by the Transcriptional Co-activator Gcn5 Plays a Novel Role in Co-transcriptional Spliceosome Assembly"
9:00 pm - 9:05 pm Discussion
9:05 pm - 9:20 pm Tien-Hsien Chang (Ohio State University)
"Modes of Bypassing Sub2p Suggest a Novel Link between Transcription and Splicing in Yeast"
9:20 pm - 9:25 pm Discussion
MONDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmGENOMICS, RNOMICS, AND EVOLUTION
Discussion Leader: Mariano Garcia-Blanco (Duke University)
9:00 am - 9:20 am Manuel Ares (University of California, Santa Cruz)
"Extracting Concrete Information about Splicing Regulation from Genome-level Data"
9:20 am - 9:30 am Discussion
9:30 am - 9:50 am Gil Ast (Tel Aviv University)
"The One Million Alus' March to Human Transcriptomic Diversity"
9:50 am - 10:00 am Discussion
10:00 am Coffee Break
10:30 am - 10:50 am Steven Brenner (University of California, Berkeley)
"Ultraconserved Nonsense: Regulation of SR Genes by Alternative Splicing"
10:50 am - 11:00 am Discussion
11:00 am - 11:20 am Chris Burge (MIT)
"Global Patterns in Tissue-Specific Alternative Splicing"
11:20 am - 11:30 am Discussion
11:30 am - 11:50 am Chris Lee (UCLA)
"Alternative Splicing and the Evolution of Exon Duplications in Insect DSCAM Genes"
11:50 am - 12:00 pm Discussion
12:00 pm - 12:20 pm John Castle (Rosetta Inpharmatics)
"Genome-wide, Systematic Study of Alternative Splicing Regulation in Human Tissues"
12:20 pm - 12:30 pm Discussion
12:30 pmGroup Photo / Lunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session I
6:00 pmDinner
7:30 pm - 9:30 pmTRANSLATIONAL CONTROL
Discussion Leader: Anita Hopper (Ohio State University, Columbus)
7:30 pm - 7:50 pm Frédéric Allain (ETH, Zürich)
"NMR of Protein-RNA Complexes: Insight into Mechanisms of Translation and Splicing Regulation"
7:50 pm - 8:00 pm Discussion
8:00 pm - 8:20 pm Fátima Gebauer (Center for Genomic Regulation, Barcelona)
"Translational Control of X Chromosome Dosage Compensation"
8:20 pm - 8:30 pm Discussion
8:30 pm - 8:50 pm Joel Richter (University of Massachusetts, Worcester)
"Translational Control of p53 mRNA Regulates Human Cellular Senescence"
8:50 pm - 9:00 pm Discussion
9:00 pm - 9:20 pm Peter Sarnow (Stanford University School of Medicine)
"Subversion of a Liver-Specific MicroRNA by Hepatitis C Virus"
9:20 pm - 9:30 pm Discussion
TUESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmRNA SPLICING AND DISEASE
Discussion Leader: Kristen Lynch (University of Texas Southwestern Medical Center)
9:00 am - 9:20 am Robert Darnell (Rockefeller University)
"Predicted and Observed RNA Regulatory Maps in the Brain"
9:20 am - 9:30 am Discussion
9:30 am - 9:50 am Xiang-Dong Fu (University of California, San Diego)
"Digital Analysis of Gene Expression and Alternative Splicing by High-Throughput Sequencing"
9:50 am - 10:00 am Discussion
10:00 am Coffee Break
10:30 am - 10:50 am Mariano Garcia-Blanco (Duke University)
"RNA-Protein Interactions in Illness and in Health"
10:50 am - 11:00 am Discussion
11:00 am - 11:20 am Ryszard Kole (University of North Carolina, Chapel Hill)
"Therapeutic Effects of Splice-Switching Oligonucleotides in Mouse Disease Models"
11:20 am - 11:30 am Discussion
11:30 am - 11:50 am Masatoshi Hagiwara (Tokyo Medical & Dental University)
"Mechanism of Herpesvirus-Induced Alternative Splicing of Cellular Genes"
11:50 am - 12:00 pm Discussion
12:00 pm - 12:20 pm Thomas Cooper (Baylor College of Medicine)
"The Pathogenic Mechanisms of an RNA Gain-of-Function in Myotonic Dystrophy"
12:20 pm - 12:30 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session II
6:00 pmDinner
7:30 pm - 9:30 pmSPLICING REGULATION
Discussion Leader: Susan Wente (Vanderbilt University)
7:30 pm - 7:50 pm Kristen Lynch (University of Texas Southwestern Medical Center)
"Context-Dependent Differences in Mechanisms of Signal-Induced Exon Repression"
7:50 pm - 8:00 pm Discussion
8:00 pm - 8:20 pm Juan Valcárcel (Center for Genomic Regulation, Barcelona)
"Cellular Programs that Regulate Alternative Splicing"
8:20 pm - 8:30 pm Discussion
8:30 pm - 8:50 pm Benjamin Blencowe (University of Toronto)
"Global Regulation of Alternative Splicing in the Mammalian Nervous System"
8:50 pm - 9:00 pm Discussion
9:00 pm - 9:20 pm Andrea Barta (University of Vienna)
"Analysis of Alternative Splicing in Arabidopsis: SR Proteins and their Influence on Plant Development"
9:20 pm - 9:30 pm Discussion
WEDNESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmRNA TURNOVER
Discussion Leader: Brenda Bass (University of Utah, Salt Lake City)
9:00 am - 9:20 am Allan Jacobson (University of Massachusetts, Worcester)
"NMD and Termination Regulation in Yeast"
9:20 am - 9:30 am Discussion
9:30 am - 9:50 am Hervé LeHir (Center for Molecular Genetics, CNRS, Gif-Sur-Yvette)
"Structure-Function Relationship of the Exon Junction Complex: a Central Effector of mRNA Destiny"
9:50 am - 10:00 am Discussion
10:00 am Coffee Break
10:00 am - 10:20 am Lynne Maquat (University of Rochester)
"Nonsense-Mediated mRNA Decay in Mammals: A role for Translational Repression"
10:50 am - 11:00 am Discussion
11:00 am - 11:20 am Bill Marzluff (University of North Carolina, Chapel Hill)
"Novel Reactions in Regulation and Expression of Histone mRNAs in Mammalian Cells"
11:20 am - 11:30 am Discussion
11:30 am - 11:50 am Eric Phizicky (University of Rochester)
"Degradation of Several Hypomodified Mature tRNA Species in S. cerevisiae is Mediated by Met22 and the 5'-3' exonucleases Rat1 and Xrn1"
11:50 am - 12:00 pm Discussion
12:00 pm - 12:20 pm Elmar Wahle (Martin-Luther-Universität Halle-Wittenberg)
"The Mechanism of Poly(A) Tail Length Control"
12:20 pm - 12:30 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session III
6:00 pmDinner
7:30 pm - 9:30 pmSPLICING CATALYSIS AND FIDELITY
Discussion Leader: Manuel Ares (University of California, Santa Cruz)
7:30 pm - 7:50 pm Xavier Roca (Cold Spring Harbor Laboratory)
"A New Mechanism of Atypical 5'-Splice-Site Recognition by Shifted Base-Pairing to U1 snRNA"
7:50 pm - 8:00 pm Discussion
8:00 pm - 8:20 pm Charles Query (Albert Einstein College of Medicine)
"An Orthogonal System for In Vivo Investigation of U2 snRNA-Branch Site Interaction and Nucleophile Presentation During pre-mRNA Splicing"
8:20 pm - 8:30 pm Discussion
8:30 pm - 8:50 pm Jonathan Staley (University of Chicago)
"Regulating the Activity and Specificity of the Spliceosome"
8:50 pm - 9:00 pm Discussion
9:00 pm - 9:20 pm Saba Valadkhan (Case Western Reserve University)
"Mechanism of Spliceosomal Catalysis: Insights from a Minimal Splicing System"
9:20 pm - 9:30 pm Discussion
THURSDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmNON-CODING RNAs
Discussion Leader: Andrea Barta (University of Vienna)
9:00 am - 9:20 am Brenda Bass (University of Utah, Salt Lake City)
"Non-Coding RNAs in C. elegans"
9:20 am - 9:30 am Discussion
9:30 am - 9:50 am Bryan Cullen (Duke University)
"Regulation of Viral and Cellular mRNAs by Virally Encoded MicroRNAs"
9:50 am - 10:00 am Discussion
10:00 am Coffee Break
10:00 am - 10:20 am Witold Filipowicz (Friederich Miescher Institute, Basel)
"MicroRNA Repression of Protein Synthesis in Mammalian Cells"
10:50 am - 11:00 am Discussion
11:00 am - 11:20 am Alexander Hüttenhofer (Innsbruck Medical University)
"Subtractive Hybridization and RNP Libraries: Novel Methods to Detect Functional ncRNAs"
11:20 am - 11:30 am Discussion
11:30 am - 11:50 am Amy Pasquinelli (University of California, San Diego)
"Regulation of MicroRNA Expression and Function in C. elegans"
11:50 am - 12:00 pm Discussion
12:00 pm - 12:30 pmBusiness Meeting
(Nominations for the next Vice Chair; Fill out Conference Evaluation Forms; Discuss future Site & Scheduling preferences; Election of the next Vice Chair)
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session IV
6:00 pmDinner
7:30 pm - 9:30 pmSPATIAL CONTROL
Discussion Leader: Joel Richter (University of Massachusetts, Worcester)
7:30 pm - 7:50 pm Anita Hopper (Ohio State University, Columbus)
"Retrograde Nuclear Accumulation of Cytoplasmic tRNA - a Conserved Response to Nutrient Deprivation"
7:50 pm - 8:00 pm Discussion
8:00 pm - 8:20 pm David Spector (Cold Spring Harbor Laboratory)
"Nuclear Retained Non-Coding RNAs"
8:20 pm - 8:30 pm Discussion
8:30 pm - 8:50 pm Susan Wente (Vanderbilt University)
"Gle1 Control of Multiple Steps in the mRNP Life Cycle"
8:50 pm - 9:00 pm Discussion
9:00 pm - 9:20 pm Gordon Carmichael (University of Connecticut Health Center)
"Alu-Element-Mediated Gene Silencing"
9:20 pm - 9:30 pm Discussion
FRIDAY
7:30 am - 8:30 amBreakfast
9:00 amDepart

Funding for this conference was made possible (in part) by 1 R13 HG004673-01 from the National Human Genome Research Institute. The views expressed in written conference materials or publications and by speakers and moderators do not necessarily reflect the official policies of the Department of Health and Human Services; nor does mention by trade names, commercial practices, or organizations imply endorsement by the U.S. Government.