Gordon Research Conferences
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Conference Program
 
Single Molecule Approaches to Biology
August 17-22, 2008
Colby-Sawyer College
New London, NH

The Gordon Conference on Single Molecule Approaches to Biology covers the rapidly evolving field of development and application of single molecule techniques to biological problems. Single molecule techniques provide previously unobtainable data on fundamental biochemical processes that are essential for all forms of life, including human and human pathogens. Recently, tremendous technical developments have made it possible to detect, identify, track, and manipulate single biomolecules in an ambient environment or even in a live cell. Single molecule approaches have changed the way many biological problems are addressed. New knowledge derived from these approaches continues to emerge. The ability of single molecule approaches to avoid ensemble averaging and to capture transient intermediates and heterogeneous behavior renders them particularly powerful in elucidating mechanisms of molecular machineries: what they do, how they work individually, how they work together, and finally, how they work inside live cells. The burgeoning use of single molecule approaches to elucidate biological problems is a highly multidisciplinary pursuit. This conference seeks to bring together top experts in molecular and cell biology with innovators in the measurement and manipulation of single molecules. The intention is to better promote the use of the single-molecule approach to generate new biological knowledge and to better orient the development and implementation of single molecule techniques for compelling biological problems.


Contributors

SUNDAY
2:00 pm - 11:00 pmArrival and Check-in
6:00 pmDinner
7:30 pm - 7:40 pmWelcome / Introductory Comments by GRC Site Staff
7:40 pm - 9:30 pmFLUORESCENCE AND FORCE: OF SINGLE MOLECULES
7:40 pm - 7:55 pm Discussion Leader: W.E. Moerner (Stanford University)
7:55 pm - 8:25 pm Sunney Xie (Harvard University)
"Cell's Life Changing Decision Made by a Single-Molecule Event"
8:25 pm - 8:35 pm Discussion
8:35 pm - 9:05 pm Steven Block (Stanford University)
"Harnessing the Power of the Light Side of the Force"
9:05 pm - 9:15 pm Discussion
MONDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmMETHOD DEVELOPMENT
9:00 am - 9:15 am Discussion Leader: Shimon Weiss (University of California, Los Angeles)
9:15 am - 9:40 am Lori Goldner (NIST)
"Single Molecule Biophysics in Sub-Femtoliter Droplets"
9:40 am - 9:50 am Discussion
9:50 am - 10:15 am Rudolf Rigler (Karolinska Institute)
"APD-Imaging of Single Molecules in Single Cells"
10:15 am - 10:25 am Discussion
10:25 am - 10:45 am Coffee Break / Group Photo
10:45 am - 11:10 am Cees Dekker (TU Delft)
"Solid State Nanopores for Translocation of DNA, RNA, and Proteins"
11:10 am - 11:20 am Discussion
11:20 am - 11:45 am Toshio Ando (Kanazawa University)
"Nano-visualization of Dynamic Biomolecular Processes by High-speed AFM"
11:45 am - 11:55 am Discussion
11:55 am - 12:05 pm Rigo Pantoja (Caltech)
"A natural view of the brain using single-molecule imaging and unnatural amino acids"
12:05 pm - 12:10 pm Discussion
12:10 pm - 12:20 pm Eric White (US Genomics)
"Microbial Identification by Continuous-Flow Single-Molecule DNA Mapping"
12:20 pm - 12:25 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pmREPLICATION, TRANSCRIPTION AND TRANSLATION
7:30 pm - 7:45 pm Discussion Leader: Taekjip Ha (University of Illinois, Urbana Champaign)
7:45 pm - 8:10 pm Richard Ebright (Rutgers University)
"Single-molecule Analysis of Transcription"
8:10 pm - 8:20 pm Discussion
8:20 pm - 8:45 pm Antoine van Oijen (Harvard Medical School)
"Under the Hood of the Replisome: A Single-molecule View of DNA Replication"
8:45 pm - 8:55 pm Discussion
8:55 pm - 9:05 pmLarry Friedman (Brandeis University)
"Mechanism of transcription initiation at an activator-dependent promoter elucidated using multi-wavelength single-molecule fluorescence microscopy"
9:05 pm - 9:10 pmDiscussion
9:10 pm - 9:20 pmRuben Gonzalez (Columbia University)
"Coupling of ribosome and tRNA dynamics during translation elongation"
9:20 pm - 9:25 pmDiscussion
TUESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmCYTOSKELETON DYNAMICS AND MOTOR PROTEINS
9:00 am - 9:15 am Discussion Leader: James Spudich (Stanford University)
9:15 am - 9:40 am Yale Goldman (University of Pennsylvania)
"Navigation by Molecular Motors in Vitro"
9:40 am - 9:50 am Discussion
9:50 am - 10:15 am Thomas Pollard (Yale University)
"Investigating How Formins Regulate Actin Polymerization One Molecule at a Time"
10:15 am - 10:25 am Discussion
10:25 am - 10:50 am Joe Howard (Max Plank Institute)
"Regulation of Microtubule Dynamics by Polymerases and Depolymerizing Kinesins"
10:50 am - 11:00 am Discussion
11:00 am - 11:20 am Coffee Break
11:20 am - 11:45 am Marileen Dogterom (AMOLF)
11:45 am - 11:55 am Discussion
11:55 am - 12:05 pm Erwin Peterman (Vrije University)
"Illuminating the Way Kinesin-1 Walks Using FRET Between the Motor Domains"
12:05 pm - 12:10 pm Discussion
12:10 pm - 12:20 pm Ahmet Yildiz (UCSF)
"Intramolecular strain coordinates kinesin stepping behavior along microtubules"
12:20 pm - 12:25 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pmSUPER-RESOLUTION IMAGING
7:30 pm - 7:45 pm Discussion Leader: Xiaowei Zhuang (Harvard University)
7:45 pm - 8:10 pm Stefan Hell (Max Planck Institute)
"Far-Field Fluorescence Nanoscopy"
8:10 pm - 8:20 pm Discussion
8:20 pm - 8:45 pm Mats Gustafsson (University of California, San Francisco)
"Super-resolution Fluorescence Imaging Using Structured Illumination"
8:45 pm - 8:55 pm Discussion
8:55 pm - 9:20 pm Samuel Hess (University of Maine)
"Nanoscale Intracellular Imaging with Fluorescence Photoactivation Localization Microscopy (FPALM)"
9:20 pm - 9:30 pm Discussion
WEDNESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmBIOMOLECULAR MECHANICS
9:00 am - 9:15 am Discussion Leader: Julio Fernandez (Columbia University)
9:15 am - 9:40 am Herman Gaub (LMU München)
"Sticky Fingers Help! - Single Molecule Cut and Paste"
9:40 am - 9:50 am Discussion
9:50 am - 10:15 am Richard Berry (Oxford University)
"Torque Generation and Switching in the Bacterial Flagellar Motor"
10:15 am - 10:25 am Discussion
10:25 am - 10:50 am Amit Meller (Boston University)
"Using Nanopores to Analyze Unlabeled DNA and DNA/protein Interactions"
10:50 am - 11:00 am Discussion
11:00 am - 11:20 am Coffee Break
11:20 am - 11:45 am John Marko (Northwestern University)
"Micromechanical Study of Chromosome Organization"
11:45 am - 11:55 am Discussion
11:55 am - 12:05 pm Kipom Kim (UC Santa Barbara)
"High-resolution magnetic tweezers"
12:05 pm - 12:10 pm Discussion
12:10 pm - 12:20 pm Olga Dudko (UC San Diego)
"Single-Molecule Force Spectroscopy: Theory, Analysis, Interpretation"
12:20 pm - 12:25 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:00 pm - 7:30 pmBusiness Meeting
(Nominations for the next Vice Chair; Fill out Conference Evaluation Forms; Discuss future Site & Scheduling preferences; Election of the next Vice Chair)
7:30 pm - 9:30 pmPROBE AND METHOD DEVELOPMENT
7:30 pm - 7:45 pm Discussion Leader: Paul Selvin (University of Illinois, Urbana Champaign)
7:45 pm - 8:10 pm Richard Zare (Stanford University)
"Single Molecule Studies in a Microfluidic Platform"
8:10 pm - 8:20 pm Discussion
8:20 pm - 8:45 pm Paul Alivisatos (University of California, Berkeley)
"Optical properties of plasmon coupled single nanocrystal molecules"
8:45 pm - 8:55 pm Discussion
8:55 pm - 9:20 pm Shuming Nie (Emery University)
"Sized Minimized Quantum Dots for Single Molecule Imaging"
9:20 pm - 9:30 pm Discussion
THURSDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmNUCLEIC ACID-PROTEIN INTERACTION
9:00 am - 9:15 am Discussion Leader: Nynke Dekker (TU Delft)
9:15 am - 9:40 am Rob Phillips (Caltech)
"A Single Molecule View of Biological Action at a Distance"
9:40 am - 9:50 am Discussion
9:50 am - 10:15 am Jon Widom (Northwestern University)
"Nucleosome Dynamics and Positioning"
10:15 am - 10:25 am Discussion
10:25 am - 10:50 am Vincent Croquett (Ecole Normale)
"Behavior of the T4 Bacteriophage Primosome: Helicase Motion and Its Coupling with Primase"
10:50 am - 11:00 am Discussion
11:00 am - 11:20 am Coffee Break
11:20 am - 11:30 am Jeff Moffit (UC Berkeley)
"Discrete Steps of a DNA Packaging Motor Reveal the Inter-subunit Coordination in a Ring ATPase"
11:30 am - 11:35 am Discussion
11:35 am - 11:45 am Douglas Smith (UC San Diego)
"Studies of Viral DNA Packaging with Optical Tweezers: A Comparison of Phages Phi29, Lambda, and T4"
11:45 am - 11:50 am Discussion
11:50 am - 12:00 pm Claus Seidel (University of Düsseldorf)
"Single-molecule FRET studies of conformational transitions of Klentaq1 and nucleic acids controlling their function"
12:00 pm - 12:05 pm Discussion
12:05 pm - 12:15 pm Marcel Bruchez (Carnegie Mellon University)
"Blinking FAPs and Fluorogens for Single Molecule Ultra-High-Resolution Imaging"
12:15 pm - 12:20 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pmLIVE CELL IMAGING
7:30 pm - 7:45 pm Discussion Leader: Robert Singer (Albert Einstein College of Medicine)
7:45 pm - 8:15 pm Steven Chu (University of California, Berkeley)
8:15 pm - 8:25 pm Discussion
8:25 pm - 8:55 pm Tom Kirchhausen (Harvard Medical School)
"New ways by which clathrin coats form"
8:55 pm - 9:05 pm Discussion
9:05 pm Closing of Conference
FRIDAY
7:30 am - 8:30 amBreakfast
9:00 amDepart

 
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