Conference Program
 
Cancer Genetics & Epigenetics
January 25-30, 2009
Ventura Beach Marriott
Ventura, CA

Cancer is fundamentally a disease of abnormal gene/pathway function caused by specific alterations in the genome. The nature of these alterations – genetic and epigenetic, and the mechanisms that lead to such genomic changes is the focus of this GRC series. The field has seen a dramatic shift in the past decade from a pure genetic explanation for cancer to a mixed genetic/epigenetic explanation that has important implications for understanding disease causation, deciphering the pathways affected and devising new strategies for prevention and treatment of cancer. Sessions in the meeting will be devoted to recent developments with particular emphasis on whole genome approaches that are revolutionizing the field. Sessions will discuss genomic alterations (mutations, chromosomal changes) and epigenomic alterations (DNA methylation, histone modifications) in cancer in humans as well as in-vitro or animal models. Interactions between genetic and epigenetic changes will also be highlighted, as will clinical implications of the findings, with emphasis on drugs that target genetic or epigenetic changes.


Contributors

SUNDAY
4:00 pm - 8:00 pmArrival and Check-in (Office Closed 6:00 pm - 7:00 pm)
6:00 pmDinner
7:30 pm - 7:40 pmWelcome / Introductory Comments by GRC Site Staff
7:40 pm - 9:30 pm The Genetic and Epigenetic Landscape of Cancer
Discussion Leader: Jean-Pierre Issa (MD Anderson Cancer Center)
7:40 pm - 8:00pmElaine Mardis (Washington University)
"Whole genome sequencing and analysis of cancer cells"
8:00 pm - 8:05 pm Discussion
8:05 pm - 8:25 pmJoe Costello (UCSF)
"Evolutionarily conserved genetic and epigenetic determinants of gene expression in normal cells and cancer"
8:25 pm - 8:30 pm Discussion
8:30 pm - 8:50 pmKristian Helin (Biotech Research & Innovation Centre)
"Role of lysine methyl transferases and demethylases in stem cells and cancer"
8:50 pm - 9:00 pm Discussion
9:00 pm - 9:20pm Laura Van't Veer (UCSF)
9:20 pm - 9:30 pm Discussion
MONDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pm Mutation and methylation profiles of cancer
Discussion Leader: Peter Laird (USC)
9:00 am - 9:20 am Will Parsons (Johns Hopkins University)
"Genomic analysis of glioblastoma multiforme"
9:20 am - 9:30 am Discussion
9:30 am - 9:50 amMichael Stratton (Wellcome Trust Sanger Institute)
"Patterns of somatic mutation in human cancer genomes"
9:50 am - 10:00 am Discussion
10:00 amCoffee Break / Group Photo
10:30 am - 10:50 am Peggy Farnham (UC Davis Genome Center Genome and Biomedical Sciences Facility)
"Using ChIP-chip technology to investigate chromatin silencing in normal and tumor cells"
10:50 am - 11:00 am Discussion
11:00 am - 11:20 amGerd Pfeifer (City of Hope)
"Genome-wide DNA methylation profiling reveals mechanisms of cancer-associated methylation changes"
11:20 am - 11:30 am Discussion
11:30 am - 11:50 am Mary Hendrix (Childrens Memorial)
"Epigenetically Reprogramming Metastatic Tumor Cells with an Embryonic Microenvironment"
11:50 am - 12:00 pm Discussion
12:00 pm - 12:20 pm Anne O'Donnell (Columbia University)
"Cytosine Methylation and Breast Cancer"
12:20pm - 12:30 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pm Integrated genomic/epigenomic approaches
Discussion Leader: Joe Costello (UCSF)
7:30 pm - 7:50 pmJim Downing (St. Jude Children’s Research Hospital)
"The molecular Pathology of Acute Leukemia: recent insights from genome-wide copy number analysis"
7:50 pm - 8:00pm Discussion
8:00 pm - 8:20 pmLanlan Shen (MD Anderson Cancer Center)
"Integrated analysis of genetic and epigenetic alterations in cancer"
8:20 pm - 8:30 pm Discussion
8:30 pm - 8:50 pmAnne-Lise Borresen-Dale (The Norwegian Radium Hospital)
"Integrated genomic/epigenomic approaches applied to breast cancer"
8:50 pm - 9:00 pm Discussion
9:00 pm - 9:20 pm James Hicks (Cold Spring Harbor Laboratory)
"Programs of epigenetic and genetic alteration in breast cancer observed in human tumors and mouse model systems"
9:20 pm - 9:30 pm Discussion
TUESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pm Genetic and epigenetic instabilities
Discussion Leader: Thea Tlsty (UCSF)
9:00 am - 9:20 amFred Alt (HHMI/Children's Hospital/CBR Institute)
"DNA Double Strand Breaks, Translocations and Lymphoma"
9:20 am - 9:30 am Discussion
9:30 am - 9:50 amRalph Scully (Harvard Institutes of Medicine)
"Role of the chromatin response in mammalian double strand break repair"
9:50 am - 9:55 am Discussion
9:55 am - 10:15 amPeter Laird (USC)
"Origins of Aberrant Cancer DNA Methylation Profiles"
10:15 am - 10:20 am Discussion
10:20 am - 10:35 am Coffee Break
10:35 am - 10:50 amMarcos Estecio (University of Texas M.D. Anderson Cancer Center)
"A genome architecture marked by SINE and LINE repeats modulates CpG island predisposition to de novo methylation in cancer"
10:50 am - 10:55 am Discussion
10:55 am - 11:15 amSiavash Kurdistani (David Geffen School of Medicine at UCLA)
"Epigenetic Reprogramming for Oncogenic Transformation"
11:15 am - 11:25 am Discussion
11:25 am - 11:45 am Renato Paro (D-BSSE)
"Chaperoning epignetic control"
11:45 am - 11:50 am Discussion
11:50 am - 12:05 pm Elizaveta Benevolenskaya (University of Illinois at Chicago)
"Control of gene expression by the RBP2 histone demethylase"
12:05 pm - 12:10 pm Discussion
12:10 pm - 12:25 pm Janos Minarovits (Microbiological Res. Group, Nat'l Center Epidemiology)
"Epstein-Barr virus latency type-independent binding of CTCF to the 5' region of the latent viral promoter Cp"
12:25 pm - 12:30 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pm Mechanisms underlying molecular alterations in cancer
Discussion Leader: Cheryl Walker (MD Anderson Cancer Center)
7:30 pm - 7:50 pmAllen Yang (USC)
"What drives DNA methylation changes in cancer?"
7:50 pm - 8:00 pm Discussion
8:00 pm - 8:20 pmRandy Jirtle (Duke)
"Epigenetics: The New Genetics of Cancer Susceptibility"
8:20 pm - 8:30 pm Discussion
8:30 pm - 8:50 pm Cheryl Walker (MD Anderson Cancer Center)
"Fetal effects in carcinogenesis"
8:50 pm - 9:00 pm Discussion
9:00 pm - 9:15 pm Peter Molloy (CSIRO Molecular & Health Technologies)
"Activity of DNA Methyltransferases on RNA:DNA Hybrids and R-loop Structures"
9:15 pm - 9:20 pm Discussion
WEDNESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pm Mechanism underlying molecular alterations in cancer
Discussion Leader: Gigi Lozano (MD Anderson Cancer Center)
9:00 am - 9:20 amTak Mak (Princess Margaret Hospital)
"Regulation of Metabolism and Apoptosis by PTEN"
9:20 am - 9:30 am Discussion
9:30 am - 9:50 amSandy Chang (MD Anderson Cancer Center)
"Genomic instability and cancer in mouse models with telomere dysfunction"
9:50 am - 10:00 am Discussion
10:00 am - 10:20 amGigi Lozano (MD Anderson Cancer Center)
"Modifiers of a Cancer Phenotype"
10:20 am - 10:30 am Discussion
10:30 am - 10:50 am Coffee Break
10:50 am - 11:10 amGerard Evan (UCSF)
"Activating Tumor Suppressor Pathways"
11:10 am - 11:20 am Discussion
11:20 am - 11:45 am Nancy Dumont (UCSF)
"Epigenetic Modifications Associated with Mammory Tumor Progression"
11:45 am - 12:00 pm Discussion
12:00 pm - 12:15 pm Richard White (Dana Farber Cancer Institute/Children's Hospital)
"Zebrafish chemical genetics links embryogenesis to tumorigenesis"
12:15 pm - 12:25 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:00 pm - 7:30 pmBusiness Meeting
(Nominations for the next Vice Chair; Fill out Conference Evaluation Forms; Discuss future Site & Scheduling preferences; Election of the next Vice Chair)
7:30 pm - 9:30 pm Targeted Therapies
Discussion Leader: Peter Jones (USC)
7:30 pm - 7:50 pmFadlo Khuri (Winship Cancer Institute)
"Chasing Oncogene Addiction into the Clinic"
7:50 pm - 8:00 pm Discussion
8:00 pm - 8:20 pm Peter Jones (USC)
"Epigenetic therapy"
8:20 pm - 8:30 pm Discussion
8:30 pm - 8:50 pm Susan Bates (National Cancer Institute)
"HDAC inhibitors, mechanisms of actions, and clinical translations"
8:50 pm - 9:00 pm Discussion
9:00 pm - 9:20 pmRobert Brown (University College London)
"Targeting acquired drug resistance of ovarian cancer"
9:20 pm - 9:30 pm Discussion
THURSDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pm Genetics and epigenetics of cancer: New directions
Discussion Leader: Kristian Helin (Biotech Research & Innovation Centre)
9:00 am - 9:20 amBruno Amati (European Institute of Oncology)
"Analysis of Myc-induced histone modifications"
9:20 am - 9:25 am Discussion
9:25 am - 9:45 amMichael Green (Howard Hughes Medical Institute)
"Oncogene-Induced Epigenetic Silencing"
9:45 am - 9:55 am Discussion
9:55 am - 10:10 am Joseph Lipsick (Stanford University School of Medicine)
"Epigenetic Regulation of Gene Expression by the Drosophila Myb Oncoprotein and the E2F-RB Tumor Suppressor Complex"
10:10 am - 10:15 am Discussion
10:15 am - 10:30 amBarbara Panning (University of California, San Francisco)
"The tumor suppressor Tip60 has a unique role in maintenance of stem cell identity"
10:30 am - 10:35 am Discussion
10:35 am - 10:45 am Coffee Break
10:45 am - 11:10 amTerumi Kohwi-Shigematsu (University of California)
"SATB1-induced epigenetic changes in breast cancer"
11:10 am - 11:20 am Discussion
11:20 am - 11:40 am Steve Baylin (Johns Hopkins)
"DNA Methylation in stem cell and cancer"
11:40 am - 11:50 am Discussion
11:50 am - 12:05 pm Hiroyuki Aburatani (University of Tokyo)
"Integrated analysis of genetic and epigenetic alterations in liver cancer"
12:05 pm - 12:10 pm Discussion
12:10 pm - 12:25 pm Calum Macaulay (BC Cancer Agency/ BC Cancer Research Centre)
"Detection of Clonal Clusters of Cell with Genetic Profiles Associated with Specific Biological Behavior in Clinical Material"
12:25 pm - 12:30 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pm Genetics and epigenetics of cancer: New directions
Discussion Leader: Susan Clark (The Garvan Institute of Medical Research)
7:30 pm - 7:50 pm Susan Clark (The Garvan Institute of Medical Research)
"Chromatin domains in cancer"
7:50 pm - 8:00 pm Discussion
8:00 pm - 8:20 pm Francois Radvanyi (Institut Curie - CNRS)
"Gene expression profiling in cancer"
8:20 pm - 8:30 pm Discussion
8:30 pm - 8:50 pm George Reid (European Molecular Biology Laboratory)
"Cyclical methylation of promoter DNA"
8:50 pm - 9:00 pm Discussion
9:00 pm - 9:20 pmDaniel Vidal (Ludwig Institute for Cancer Research)
"Genome-wide analysis of allelic differential expression using allele-specific SAGE tags"
9:20 pm - 9:30 pm Discussion
FRIDAY
7:30 am - 8:30 amBreakfast
9:00 amDeparture