Conference Program
 
Nucleosides, Nucleotides & Oligonucleotides
July 5-10, 2009
Salve Regina University
Newport, RI
Chair:
Varsha Gandhi

Vice Chair:
Piet Herdewijn

What makes us all the same and what makes us all different resides in our genetic material. Decoding of the chemical structure of DNA has led to a conceptual understanding of genetic processes. The sequence of DNA is the major storehouse for hereditary information, but epigenetic changes that result in silencing of genes is surfacing as a primary mechanism of modulating the genetic code. Similarly, interfering RNAs such as microRNAs also suppress or enhance this genetic information. The mutations arising from replication errors result in modulation of genome of a cell. These are addressed by the DNA repair processes that do proof-reading, excision or mismatch repairs. It is the goal of the GRC on Nucleosides, Nucleotides and Oligonucleotides (N2O) to aid investigators in learning about the newest developments relating to these fundamental actions in nucleic acid metabolism, as these processes provide a guideline to understand origin and treatment of diseases such as cancer, and viral infections.

While normal nucleosides result in DNA and RNA macromolecules, abnormal nucleosides have become the major class of therapeutics for cancer and viral diseases. Nucleoside analogues have been used for half a century but oligonucleotides are in an infancy stage for clinical use. Nonetheless, they are becoming tools for altering, silencing, and activating gene expressions that allow us to understand the cellular milieu and effect of each transcript or protein. Many revolutionary concepts involving specifically designed RNA and DNA oligonucleotides with novel functions have been shown to be useful in target validation and as new analytical and therapeutic agents. Challenges that were faced for delivery of these oligonucleotides resulted in a brand new field of transport and delivery including nanoparticles.

The 2009 N2O conference will focus on these aspects of nucleic acid. We are planning to have cutting-edge science that deals with nucleosides, nucleotides, and oligonucleotides as tools, as therapeutics, and as fundamentals of our genome.


Contributors
Cell Press
Cephalon Oncology
Gilead Sciences
CLL Global Research Foundation
Idenix Pharmaceuticals Inc.
National Institutes of Health
Supergen, Inc.

SUNDAY
2:00 pm - 9:00 pmArrival and Check-in (Office Closed 6:00 pm - 7:00 pm)
6:00 pmDinner
7:30 pm - 7:40 pmWelcome / Introductory Comments by GRC Site Staff
7:40 pm - 8:00 pmWelcome Address by Conference Chair
8:00 pm - 9:20 pm Keynote Lecture: DNA Polymerases
8:00 pm - 8:10 pmDiscussion Leader: Robert Kuchta (University of Colorado)
"Introduction of the topic"
8:10 pm - 8:50 pmThomas Kunkel (National Institutes of Environmental Health Sciences)
"Preventing, Generating and Correcting DNA Replication Errors"
8:50 pm - 9:20 pm Discussion
9:20 pm - 10:30 pm Chair’s Reception
MONDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pm DNA Repair
9:00 am - 9:10 amDiscussion Leader: Bill Plunkett (M.D. Anderson Cancer Center)
"Introduction of the topic"
Co-Discussion Leader: Christine Canman (University of Michigan)
9:10 am - 9:40 amLawrence Loeb (University of Washington)
"A DNA Polymerase-delta Deletion Mutator Promotes Tumor Progression"
9:40 am - 10:00 am Discussion
10:00 am Coffee Break / Group Photo (10:15 am)
10:30 am - 11:10 amPeggy Hsieh (National Institute of Health)
"DNA Mismatch Repair: Genome Stability and DNA Damage Signaling"
11:10 am - 11:30 am Discussion
11:30 am - 12:10 pmBradley Preston (University of Washington)
"Pathways Suppressing Spontaneous Mutation and Cancer in Mice"
12:10 pm - 12:30 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pm Target Enzymes: SAR
7:30 pm - 7:40 pmDiscussion Leader: Donna Shewach (University of Michigan Medical School)
"Introduction of the topic"
Co-Discussion Leader: Karen Anderson (Yale University)
7:40 pm - 8:15 pmChris Dealwis (Case Western Reserve University)
"The Anti-Cancer Target Ribonucleotide Reductase: Characterization of Drug Interactions and Design"
8:15 pm - 8:35 pm Discussion
8:35 pm - 9:10 pmArnon Lavie (University of Illinois Chicago)
"Exploring, Expanding, and Exploiting the Substrate Specificity of Human Deoxycytidine Kinase"
9:10 pm - 9:30 pm Discussion
TUESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pm Gene Expression and Silencing
9:00 am - 9:10 amDiscussion Leader: Victor Marquez (Center for Cancer Research, NCI)
"Introduction of the topic"
Co-Discussion Leader: Deepa Sampath (M.D. Anderson Cancer Center)
9:10 am - 9:40 amMasad J. Damha (McGill University, Canada)
"siRNAs Without 2’-Hydroxyl Groups - Can They Tango the RNAi Tune?"
9:40 am - 10:00 am Discussion
10:00 am Coffee Break
10:30 am - 11:10 amGeorge Calin (M.D. Anderson Cancer Center)
"Noncoding RNAs - From Discoveries to Therapy"
11:10 am - 11:30 am Discussion
11:30 am - 12:10 pmPeter Jones (Norris Comprehensive Cancer Center)
"Novel Inhibitors of DNA Methylation"
12:10 pm - 12:30 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pm Other Uses of Nucleosides
7:30 pm - 7:40 pmDiscussion Leader: Steven M. Graham (St. John’s University)
"Introduction of the topic"
Co-Discussion Leader: Thomas Kalman (State University NY, Buffalo)
7:40 pm - 8:00 pmJames B. Kirkland (University of Guelph)
"Niacin Status, Cyclic ADP-ribose and Behavior in Rodents"
8:00 pm - 8:17 pm Discussion
8:17 pm - 8:37 pmMichael Williams (Cephalon, Inc)
"Purinergic Signaling"
8:37 pm - 8:54 pm Discussion
8:54 pm - 9:14 pmVasu Nair (University of Georgia)
"Inhibitors of HIV Integrase"
9:14 pm - 9:30 pm Discussion
WEDNESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pm Nucleoside Imaging, Transport and Analog Actions
9:00 am - 9:10 amDiscussion Leader: William Parker (Southern Research Institute)
"Introduction of the topic"
Co-Discussion Leader: Jatinder Lamba (University of Minnesota)
9:10 am - 9:40 amEric Kool (Stanford University)
"Nonpolar Nucleoside Analogs: Probing Nucleotide and RNA Processing Pathways"
9:40 am - 10:00 am Discussion
10:00 am Coffee Break
10:30 am - 11:10 amCarol Cass (University of Alberta)
"Nucleoside Transporters and Cancer Therapeutics: From Biochemistry to Cancer Care"
11:10 am - 11:30 am Discussion
11:30 am - 12:10 pmYung-Chi Cheng (Yale University School of Medicine)
"Novel Mode and Action of Nucleoside Analogs: 4’-Ed4T Against HIV, L(-)OddC Against Cancer and L(-)FMAU Against HBV and Cancer"
12:10 pm - 12:30 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:00 pm - 7:30 pmBusiness Meeting
(Nominations for the next Vice Chair; Fill out Conference Evaluation Forms; Discuss future Site & Scheduling preferences; Election of the next Vice Chair)
7:30 pm - 9:30 pm mRNA Recognition and mRNA Polyadenylation
7:30 pm - 7:40 pmDiscussion Leader: Jyoti Chattopadhyaya (Uppsala University)
"Introduction of the topic"
Co-Discussion Leader: Len Erickson (Indiana University)
7:40 pm - 8:15 pmDinshaw Patel (Memorial Sloan-Kettering Cancer Center)
"Small RNAs: Mediators of Gene Regulation and Silencing"
8:15 pm - 8:35 pm Discussion
8:35 pm - 9:10 pmJames Manley (Columbia University)
"Poly(A) Polymerase and Control of mRNA 3’ Processing"
9:10 pm - 9:30 pm Discussion
THURSDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pm Synthetic Strategies for Analogs
9:00 am - 9:10 amDiscussion Leader: Barbara Ramsey Shaw (Duke University)
"Introduction of the topic"
Co-Discussion Leader: Frank Seela (University of Osnabrueck)
9:10 am - 9:40 am Eric Koehn (University of Iowa)
"An Unusual Mechanism of Thymidylate Biosynthesis in Organisms Containing the thyX Gene"
9:40 am - 10:00 am Discussion
10:00 am Coffee Break
10:30 am - 11:10 amChris Meier (University of Hamburg)
"Nucleotide Prodrugs - Recent Advances for the Intracellular Delivery Of Nucleotides and Nucleoside Diphosphates"
11:10 am - 11:30 am Discussion
11:30 am - 12:10 pmMichael Sofia (Pharmasset)
"2’-C-Methyl Nucleosides for the Treatment of HCV: From Discovery to the Clinic"
12:10 pm - 12:30 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pm Best Abstracts
Discussion Leader: Piet Herdewijn (Rega Institute, Belgium)
Co-Discussion Leader: Nancy Krett (Northwestern University)
7:30 pm - 7:45 pm Mala Shanmugam (Northwestern University)
7:45 pm - 8:00 pm Xiaojun Liu (M D Anderson Cancer Center)
8:00 pm - 8:15 pm Misha Nikiforov (Roswell Park Cancer Institute)
8:15 pm - 8:30 pm Christine Stellrecht (M D Anderson Cancer Center)
8:30 pm - 8:45 pm Dong Wang (Stanford University)
8:45 pm - 9:00 pm Yan Jia (University of Minnesota)
9:00 pm - 9:15 pm James Youell (University of Portsmouth)
9:15 pm - 9:30 pm Daniel Fordham (University of Portsmouth)

Funding for this conference was made possible (in part) by 1 R13 CA139647-01 from the National Cancer Institute. The views expressed in written conference materials or publications and by speakers and moderators do not necessarily reflect the official policies of the Department of Health and Human Services; nor does mention by trade names, commercial practices, or organizations imply endorsement by the U.S. Government.