Gordon Research Conferences
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Conference Program
 
Molecular Basis of Microbial One-Carbon Metabolism
August 1-6, 2010
Bates College
Lewiston, ME
Chair:
Madeline E. Rasche

Vice Chair:
Julia Vorholt

One-carbon (C-1) compounds play a central role in microbial metabolism. C-1 compounds include methane, carbon monoxide, CO2, and methanol as well as coenzyme-bound one-carbon compounds, such as methyl-B12 and CH3-H4folate. Such compounds are of broad global importance because several C-1 compounds (e.g., CH4) are important energy sources, some (e.g., CO2 and CH4) are potent greenhouse gases, and others (e.g., CH2Cl2) are xenobiotics. They are central in pathways of energy metabolism and carbon fixation by microbes and many are of industrial interest. Research on the pathways of one-carbon metabolism has added greatly to our understanding of evolution, structural biology, enzyme mechanisms, gene regulation, ecology, and applied biology. The 2010 meeting will include recent important findings in the following areas: (a) genomics, metagenomics, and proteomic studies that have expanded our understanding of autotrophy and C-1 metabolism and the evolution of these pathways; (b) regulation of carbon cycles and the interrelationship between the carbon cycle and other biogeochemical cycles (sulfur, nitrogen, oxygen); (c) novel pathways for carbon assimilation; (d) biotechnology related to C-1 metabolism; (e) novel enzyme mechanisms; and (f) the relationship between metal homeostasis and the global carbon cycle. The conference has a diverse and gender-balanced slate of speakers and session leaders. The wide variety of disciplines brought to the study of C-1 metabolism make the field an excellent one in which to train young researchers.


Contributors

SUNDAY
2:00 pm - 9:00 pmArrival and Check-in (Office Closed 6:00 pm - 7:00 pm)
6:00 pmDinner
7:30 pm - 7:40 pmWelcome / Introductory Comments by GRC Site Staff
7:40 pm - 9:30 pmGENOMICS AND METAGENOMICS OF C-1 METABOLISM
7:40 pm - 7:45 pm Discussion Leader: Stéphane Vuilleumier (Université de Strasbourg, France)
"Introduction"
7:45 pm - 8:10 pm Ludmila Chistoserdova (University of Washington, Seattle, USA)
"From meta-omics approaches to a single organism physiology"
8:10 pm - 8:20 pm Discussion
8:20 pm - 8:45 pm Steven Hallam (University of British Columbia, Canada)
"Variations on a central theme: C1 pathway differentiation among ANME ecotypes"
8:45 pm - 8:55 pm Discussion
8:55 pm - 9:20 pm Martin Klotz (University of Louisville, USA)
"Methanotroph genomics - a first comparative assessment of inventory"
9:20 pm - 9:30 pm Discussion
MONDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmMETHANOGENESIS
9:00 am - 9:05 am Discussion Leader: Seigo Shima (Max-Planck-Institute for terrestrial Microbiology, Marburg, Germany)
"Introduction"
9:05 am - 9:30 am Joseph Krzycki (Ohio State University, Columbus, USA)
"The many layers of methanogenesis from methylamines"
9:30 am - 9:40 am Discussion
9:40 am - 10:00 am Cheryl Smith (Clemson University, USA)
"Insights into the structure and catalysis of acyl-CoA synthetases in methanogens"
10:00 am - 10:10 am Discussion
10:10 am Coffee Break / Group Photo
10:45 am - 11:10 am Robert White (Virginia Tech, Blacksburg, USA)
"The mystery of 4-aminobenzoic acid use in the methanogens"
11:10 am - 11:20 am Discussion
11:20 am - 11:45 am John Leigh (University of Washington, Seattle, USA)
"Pathways of electron flow and energy conservation in hydrogenotrophic methanogens"
11:45 am - 11:55 am Discussion
11:55 am - 12:20 pm William Metcalf (University of Illinois, Urbana, USA)
"Hydrogen-cycling as a mechanism of energy conservation in Methanosarcina"
12:20 pm - 12:30 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pmSTRUCTURE AND FUNCTION OF C1 ENZYMES AND SUBCELLULAR COMPARTMENTS
7:30 pm - 7:35 pm Discussion Leader: Cheryl Kerfeld (University of California, Berkeley, USA)
"Introduction"
7:35 pm - 8:00 pm Amy Rosenzweig (Northwestern University, Evanston, USA)
"The active site of particulate methane monooxygenase"
8:00 pm - 8:10 pm Discussion
8:10 pm - 8:25 pm David Savage (Harvard Medical School, Boston, USA)
"Spatially ordered dynamics of the cyanobacterial carboxysome"
8:25 pm - 8:30 pm Discussion
8:30 pm - 8:45 pm Tobias Erb (University of Illinois, Urbana, USA)
"Emergence and diversification of carboxylases"
8:45 pm - 8:50 pm Discussion
8:50 pm - 9:15 pm F. Robert Tabita (Ohio State University, Columbus, USA)
"RubisCO: The enzyme that continues to keep on giving"
9:15 pm - 9:30 pm Discussion
TUESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmAEROBIC METHYL- AND METHANOTROPHY
9:00 am - 9:05 am Discussion Leader: Peter Dunfield (University of Calgary, Alberta, Canada)
"Introduction"
9:05 am - 9:30 am Colin Murrell (University of Warwick, UK)
"Metabolic diversity in the facultative methanotroph Methylocella silvestris"
9:30 am - 9:40 am Discussion
9:40 am - 9:55 am Kartik Chandran (Columbia University, New York, USA)
"Molecular microbial ecology of denitrifying bacteria assimilating C1-C3 compounds"
9:55 am - 10:00 am Discussion
10:00 am Coffee Break
10:30 am - 10:50 am Richard Cooley (Oregon State University, Corvallis, USA)
"On the Evolution of pi-helices and Soluble Methane Monooxygenase"
10:50 am - 11:00 am Discussion
11:00 am - 11:20 am Marcellus Ubbink (Leiden University, The Netherlands)
"The methylamine redox chain of Paracoccus denitrificans: a non-specific network of protein interactions"
11:20 am - 11:30 am Discussion
11:30 am - 11:50 am Jean-Charles Portais (Université Paul Sabatier / INSA Toulouse, France)
"Functional analysis of the metabolic network of Methylobacterium extorquens"
11:50 am - 12:00 pm Discussion
12:00 pm - 12:20 pm Christopher J. Marx (Harvard University, Cambridge, USA)
"Experimental evolution of Methylobacterium: insights into physiology and adaptation"
12:20 pm - 12:30 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pmANAEROBIC OXIDATION OF METHANE
7:30 pm - 7:35 pm Discussion Leader: Huub Op den Camp (Radboud University Nijmegen, The Netherlands)
"Introduction"
7:35 pm - 7:55 pm Günter Wegener (Max-Planck-Institute for marine Microbiology, Bremen, Germany)
"Multiple isotope probing reveals surprising metabolic features of microorganisms catalyzing the anaerobic oxidation of methane"
7:55 pm - 8:05 pm Discussion
8:05 pm - 8:30 pm Katharina Ettwig (Radboud University Nijmegen, The Netherlands)
"Nitrite-reducing bacteria activate methane via intermediate oxygen"
8:30 pm - 8:40 pm Discussion
8:40 pm - 8:55 pm Peter R. Girguis (Harvard University, Cambridge, USA)
"Physiology and biogeochemsitry of thermophilic anaerobic oxidation of methane in a sedimented hydrothermal vent ecosystem"
8:55 pm - 9:00 pm Discussion
9:00 pm - 9:20 pm Tina Treude (IFM-GEOMAR, Kiel, Germany)
"Why should we care about anaerobic oxidation of methane?: The role of the benthic methane filter in a changing climate"
9:20 pm - 9:30 pm Discussion
WEDNESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmC1 METABOLISM, ECOLOGY, PHYSIOLOGY & ENVIRONMENT
9:00 am - 9:05 am Discussion Leader: Alan DiSpirito (Iowa State University, Ames, USA)
"Introduction"
9:05 am - 9:30 am Svetlana Dedysh (Winogradsky Institute of Microbiology, Russian Academy of Sciences)
"Acetate-driven growth in methanotrophic bacteria possessing particulate methane monooxygenase"
9:30 am - 9:40 am Discussion
9:40 am - 9:55 am Steven W. Singer (Lawrence Berkeley National Laboratory, USA)
"Understanding carbon cycling in low-diversity chemoautotrophic microbial communities"
9:55 am - 10:00 am Discussion
10:00 am Coffee Break
10:30 am - 10:50 am Hendrik Schäfer (University of Warwick, UK)
"Biochemical, genetic and environmental aspects of bacterial methanethiol degradation"
10:50 am - 11:00 am Discussion
11:00 am - 11:30 am Thomas Hanson (Delaware Biotechnology Institute, USA)
"Reduced sulfur compound oxidation driving C1 assimilation in green phototrophic bacteria: complex physiology in 'simple' organisms"
11:30 am - 11:45 am Discussion
11:45 am - 12:15 pm Harold Drake (University of Bayreuth, Germany)
"Intermediary Ecosystem Metabolism: Hidden Art Linked to Methanogenesis"
12:15 pm - 12:30 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:00 pm - 7:30 pmBusiness Meeting
(Nominations for the next Vice Chair; Fill out Conference Evaluation Forms; Discuss future Site & Scheduling preferences; Election of the next Vice Chair)
7:30 pm - 9:30 pmACETOGENESIS
7:30 pm - 7:35 pm Discussion Leader: Michael Rother (University of Frankfurt, Germany)
"Introduction"
7:35 pm - 8:05 pm Stephen W. Ragsdale (University of Michigan, Ann Arbor, USA)
"Tickling CO dehydrogenase with light, electrons, and little molecules"
8:05 pm - 8:20 pm Discussion
8:20 pm - 8:40 pm Nozomi Ando (MIT, Cambridge, USA)
"Protein complexes in acetogenic B12-dependent methyl transfer"
8:40 pm - 8:50 pm Discussion
8:50 pm - 9:15 pm Volker Müller (University of Frankfurt, Germany)
"Towards solving the enigma of energy metabolism in Acetobacterium woodii: role of the Rnf complex"
9:15 pm - 9:30 pm Discussion
THURSDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmAUTOTROPHY AND PHOTO-/CHEMOLITHOTROPHY
9:00 am - 9:05 am Discussion Leader: Kathleen Scott (University of South Florida, USA)
"Introduction"
9:05 am - 9:35 am Mike Jetten (Radboud University Nijmegen, The Netherlands)
"Dinitrogen production by anammox bacteria"
9:35 am - 9:50 am Discussion
9:50 am - 10:05 am Young M. Kim (Yonsei University, Seoul, Korea)
"Regulation of expression of the genes for carbon monoxide dehydrogenase in Mycobacterium sp. strain JC1"
10:05 am - 10:10 am Discussion
10:10 am Coffee Break
10:40 am - 11:00 am Ivan Berg (University of Freiburg, Germany)
"Autotrophic carbon dioxide fixation pathways in Crenarchaeota"
11:00 am - 11:10 am Discussion
11:10 am - 11:35 am Masaharu Ishii (University of Tokyo, Japan)
"Integrated biochemical studies on Hydrogenobacter thermophilus, an obligately autotrophic bacterium"
11:35 am - 11:45 am Discussion
11:45 am - 12:15 pm Nicole Dublier (Max-Planck-Institute for marine Microbiology, Bremen, Germany)
"The more the better: metagenomic and metaproteomic analyses reveal multiple pathways for autotrophy and chemolithotrophy in the bacterial symbionts of a gutless marine worm"
12:15 pm - 12:30 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pmC-1 PERSPECTIVES
7:30 pm - 7:40 pm Discussion Leader: Daniel Arp (Oregon State University, Corvallis, OR, USA)
"Introduction"
7:40 pm - 8:00 pm Thomas Bobik (Iowa State University, Ames, USA)
"Potential applications of the syngas fermentation to the production of biofuels and green chemicals"
8:00 pm - 8:10 pm Discussion
8:10 pm - 8:25 pm Karen Wawrousek (National Renewable Energy Laboratory, Golden, USA)
"The CO Oxidation and H2 Production System in the Photosynthetic Bacterium Rubrivivax gelatinosus CBS"
8:25 pm - 8:30 pm Discussion
8:30 pm - 9:10 pm Keynote Talk: Rolf Thauer (Max-Planck-Institute for terrestrial Microbiology, Marburg, Germany)
"Methanogenic and methanotrophic Archaea: Life near the thermodynamic equilibrium"
9:10 pm - 9:25 pm Discussion
FRIDAY
7:30 am - 8:30 amBreakfast
9:00 amDeparture

 
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