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Conference Program
 
Biomolecular Interactions & Methods
Protein Interaction Dynamics: Theory Method & Practice
January 15-20, 2012
Hotel Galvez
Galveston, TX

Related Meeting Information
The Biomolecular Interactions & Methods Gordon Research Conference was held in conjunction with the Biomolecular Interactions & Methods Gordon Research Seminar. Please refer to the Biomolecular Interactions & Methods GRS web page for more information.

In the past decade, our understanding of the molecular mechanisms and timing of cellular processes has reached new levels, with exciting advances in structural biology, biophysics, theoretical approaches, single-molecule techniques, and systems biology. The structures of large macromolecular complexes, the thermodynamic and kinetic descriptions of rate-limiting steps, the quantitative study of single molecules at work, and the theoretical framework for modeling interactions and networks of interactions have revolutionized our understanding of relationships between biomolecular interactions and cellular function and disease. The principal purpose of this GRC is to provide an international forum for information exchange that will lead to better integration of knowledge from atomic resolution structures to functional roles in intact systems. Our focus is on understanding molecular mechanisms, from primary processes underlying molecular recognition, to interaction networks in living cells. The scientific scope encompasses: protein interactions and disease; thermodynamics and kinetics; advances in biophysical methods; advances in computational methods; green biophysics; macromolecular machines and assemblages; molecular network dynamics; and single-molecule dynamics. The conference also aims to catalyze new collaborations between a diverse group of international scientists who work at the leading edge in their respective fields. This meeting provides a unique opportunity for a relatively small but diverse group of scientists to discuss the latest methods, results and theoretical approaches that underpin quantitative biological research. Often the most imaginative and creative new science is the result of collaboration between scientists from different backgrounds, and this meeting provides an ideal environment for scientists to explore ideas and experimental approaches that cut across scientific disciplines and biological systems. The associated GRS will offer students and postdocs an interactive forum for presenting their work.


Contributors

SUNDAY
4:00 pm - 8:00 pmArrival and Check-in (Office Closed 6:00 pm - 7:45 pm)
6:00 pmDinner
7:30 pm - 7:40 pmWelcome / Introductory Comments by GRC Site Staff
7:40 pm - 7:50 pmWelcome / Meeting Overview by GRC Chair, Linda Nicholson
7:50 pm - 9:30 pmSingle Molecule Dynamics
Discussion Leader: Susan Marqusee (UC Berkeley)
7:50 pm - 8:00 pmSusan Marqusee (UC Berkeley)
"Session Introduction"
8:00 pm - 8:35 pmYann Chemla (University of Illinois at Urbana - Champagne)
"High-resolution optical trap with single fluorophore sensitivity"
8:35 pm - 8:45 pmDiscussion
8:45 pm - 9:20 pmSusan Marqusee (UC Berkeley)
"Walking the landscape one step at a time"
9:20 pm - 9:30 pmDiscussion
MONDAY
7:30 am - 8:30 amBreakfast
8:30 amGroup Photo
9:00 am - 12:30 pmThermodynamics and Kinetics
9:00 am - 9:10 amBabis Kalodimos (Rutgers University)
"Session Introduction"
9:10 am - 9:35 amBertrand Garcia-Moreno (Johns Hopkins)
"Charges in hydrophobic environments"
9:35 am - 9:45 amDiscussion
9:45 am - 10:10 amKevin Gardner (UT Southwest Medical Center)
"Ligand-regulated protein/protein interactions: Role in environmental sensors"
10:10 am - 10:20 amDiscussion
10:20 am - 10:40 amCoffee Break
10:40 am - 11:05 amAnthony Kossiakoff (University of Chicago)
"Modifying biological function using conformational trapping by synthetic antibodies"
11:05 am - 11:15 amDiscussion
11:15 am - 11:40 amBabis Kalodimos (Rutgers University)
"Proline molecular switches in cell signaling"
11:40 am - 11:50 amDiscussion
11:50 am - 12:05 pmHerschel Wade (Johns Hopkins)
"Dissecting the code of MD recognition by the MDR gene regulator, BmrR"
12:05 pm - 12:10 pmDiscussion
12:10 pm - 12:25 pmJustin Hall (Pfizer)
"Biophysical and mechanistic insights into a novel allosteric inhibitor of spleen tyrosin kinase"
12:25 pm - 12:30 pmDiscussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pmAdvances in Biophysical and Computational Methods
Discussion Leader: Sarah Teichmann (MRC - Laboratory of Molecular Biology)
7:30 pm - 7:40 pmSarah Teichmann (MRC - Laboratory of Molecular Biology)
"Session Introduction"
7:40 pm - 8:05 pmMei Hong (Iowa State University)
"Elucidating protein-drug interactions in lipid membranes by solid-state NMR"
8:05 pm - 8:10 pmDiscussion
8:10 pm - 8:35 pmMadan Babu (MRC - Laboratory of Molecular Biology)
"Molecular principles of tissue-specific protein interactions mediated by alternatively spliced exons"
8:35 pm - 8:40 pmDiscussion
8:40 pm - 9:05 pmSarah Teichmann (MRC - Laboratory of Molecular Biology)
"Evolution and assembly of protein complexes"
9:05 pm - 9:10 pmDiscussion
9:10 pm - 9:25 pmDarryl Bornhop (Vanderbilt University)
"Quantification of GPCR-ligand Binding Affinity Using Back-scattering Interferometry"
9:25 pm - 9:30 pmDiscussion
TUESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmGreen Biophysics
Discussion Leader: John Golbeck (Penn State University)
9:00 am - 9:10 amJohn Golbeck (Penn State University)
"Session Introduction"
9:10 am - 9:45 amKen Nealson (University of Southern California)
"New vistas in extracellular electron transport (EET): processes and (some) mechanisms"
9:45 am - 9:55 amDiscussion
9:55 am - 10:30 amChris Moser (University of Pennsylvania)
"Design blueprints for efficient photochemical energy conversion"
10:30 am - 10:40 amDiscussion
10:40 am - 11:00 amCoffee Break
11:00 am - 11:35 amFraser Armstrong (Oxford University)
"Instructive experiments and devices in the development of green fuel technology"
11:35 am - 11:45 amDiscussion
11:45 am - 12:20 pmJohn Golbeck (Penn State University)
"Hybrid biological/organic nanoconstructs for solar biofuel generation"
12:20 pm - 12:30 pmDiscussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pmAdvances in Biophysical and Computational Methods
Karen Fleming (Johns Hopkins)
7:30 pm - 7:40 pmKaren Fleming (Johns Hopkins)
"Session Introduction"
7:40 pm - 8:05 pmSandro Keller (University of Kaiserslautern)
"A new ITC assay for measuring ultratight and low-affinity protein-ligand interactions"
8:05 pm - 8:15 pmDiscussion
8:15 pm - 8:40 pmGideon Schreiber (Weizmann Institute of Science)
"Structural and biochemical linkage between ligand binding and differential receptor activation by Type I Interferons"
8:40 pm - 8:50 pmDiscussion
8:50 pm - 9:15 pmKaren Fleming (Johns Hopkins)
"Monitoring membrane protein folding using fluorescence"
9:15 pm - 9:30 pmDiscussion
WEDNESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmMacromolecular Machines and Assemblages
Discussion Leader: Peter Rosenthal (MRC - National Institute for Medical Research)
9:00 am - 9:10 amPeter Rosenthal (MRC - National Institute for Medical Research)
"Session Introduction"
9:10 am - 9:35 amThomas Marlovits (Institute of Molecular Biotechnology, Austria)
"Dissection of the Injectisome"
9:35 am - 9:45 amDiscussion
9:45 am - 10:10 amCarolyn Moores (Birkbeck University of London)
"Molecular strategies for regulating microtubule dynamics"
10:10 am - 10:20 amDiscussion
10:20 am - 10:40 amCoffee Break
10:40 am - 11:05 amJacqueline Matthews (University of Sydney)
"Assembling a hematopoietic transcription factor complex"
11:05 am - 11:15 amDiscussion
11:15 am - 11:30 amRoberto DeGuzman (University of Kansas)
"NMR determination of the protein-protein interactions involved in the assembly of the type 3 secretion system needle and tip proteins"
11:30 am - 11:35 amDiscussion
11:35 am - 11:50 amBlake Hill (Johns Hopkins)
"A Dull Mitochondrial Knife: How disease-causing mutations in Drp1 affect mitochondrial fission"
11:50 am - 11:55 amDiscussion
11:55 am - 12:20 pmPeter Rosenthal (MRC - National Institute for Medical Research)
"High resolution imaging of assemblies inside and outside the cell"
12:20 am - 12:30 pmDiscussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:00 pm - 7:30 pmBusiness Meeting
Nominations for the next Vice Chair; Fill out Conference Evaluation Forms; Discuss future Site & Scheduling preferences; Election of the next Vice Chair
7:30 pm - 9:30 pmMolecular Network Dynamics
Discussion Leader: Justin Molloy (MRC)
7:30 pm - 7:40 pmJustin Molloy (MRC)
"Session Introduction"
7:40 pm – 8:20 pmMarc Wilkins (University of New South Wales)
"The Dynamics of Protein Interaction Networks"
8:20 pm - 8:35 pmDiscussion
8:35 pm - 9:15 pmAndy LiWang (UC - Merced)
"The Oscillating Mechanism of a Circadian Clock"
9:15 pm - 9:30 pmDiscussion
THURSDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmProtein Interactions and Disease
Discussion Leader: Susan Lea (University of Oxford)
9:00 am - 9:10 amSusan Lea (University of Oxford)
"Session Introduction"
9:10 am - 9:35 amTitia Sixma (Netherlands Cancer Institute)
"Protein:protein interactions modulate ubiquitin signaling"
9:35 am - 9:45 amDiscussion
9:45 am - 10:10 amGavin Wright (Wellcome Trust Sanger Institute)
"Systematic extracellular protein interaction screens identify a host receptor essential for erythrocyte invasion by P. falciparum"
10:10 am - 10:20 amDiscussion
10:20 am - 10:40 amCoffee Break
10:40 am - 10:55 amSamy Meroueh (Indiana University School of Medicine)
"Targeting Multiple Conformations Leads to Small Molecule Inhibitors of the uPAR•uPA Protein-Protein Interaction That Block Cancer Cell Invasion"
10:55 am - 11:00 amDiscussion
11:00 am - 11:15 amSophia Kenrick (Wyatt Technology Corporation)
"Composition-Gradient Multi-Angle Light Scattering: a multifaceted tool for use in biopharmaceutical development"
11:15 am - 11:20 amDiscussion
11:20 am - 11:45 amSusan Lea (University of Oxford)
"Weak protein:protein interactions underlying pathogensis"
11:45 am - 11:55 amDiscussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pmKeynote Speaker
Discussion Leader: Linda Nicholson (Cornell University)
7:30 pm - 7:40 pmLinda Nicholson (Cornell University)
"Introduction of Keynote Speaker"
7:40 pm - 8:40 pmLewis Kay (University of Toronto)
"Seeing the Invisible by Solution NMR Spectroscopy"
8:40 pm - 9:00 pmDiscussion
9:00 pmClosing Party
FRIDAY
7:30 am - 8:30 amBreakfast
9:00 amDeparture

Funding for this conference was made possible (in part) by R13CA165408-01 from the National Cancer Institute. The views expressed in written conference materials or publications and by speakers and moderators do not necessarily reflect the official policies of the Department of Health and Human Services; nor does mention by trade names, commercial practices, or organizations imply endorsement by the U.S. Government.

 
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