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Conference Program
 
Plant Molecular Biology
Genomic Approaches to Plant Signaling Systems
July 15-20, 2012
Holderness School
Holderness, NH

The 2012 Gordon Conference on Plant Molecular Biology will present cutting-edge research on molecular aspects of plant growth and development, with particular emphasis on recent discoveries in molecular mechanisms involved with plant signaling systems. The Conference will feature a wide range of topics in plant molecular biology including hormone receptors and early events in hormone signaling, plant perception of and response to plant pathogen and symbionts, as well as technological and biological aspects of epigenomics particularly as it relates to signaling systems that regulate plant growth and development. Genomic approaches to plant signaling will be emphasized, including genomic profiling technologies for quantifying various biological subsystems, such as the epigenome, transcriptome, phosphorylome, and metabolome. The meeting will include an important session devoted to answering the question, "What are the biological and technological limits of plant breeding/genetics, and how can they be solved"? Invited speakers represent a variety of scientific disciplines, including biochemistry, molecular genetics, structural biology, cell biology and imaging. The Conference will bring together a collection of investigators who are at the forefront of their field, and will provide opportunities for junior scientists and graduate students to present their work in poster format and exchange ideas with leaders in the field. Some poster presenters will be selected for short talks. The collegial atmosphere of this Conference located in the pristine forests and cool springs of the White Mountains of New Hampshire, with programmed discussion sessions as well as opportunities for informal gatherings in the afternoons and evenings, provides an ideal avenue for scientists from different disciplines to brainstorm and develop novel cross-disciplinary collaborations.


Contributors

SUNDAY
2:00 pm - 9:00 pmArrival and Check-in (Office Closed 6:00 pm - 7:00 pm)
6:00 pmDinner
7:30 pm - 7:45 pmWelcome / Introductory Comments by GRC Site Staff and Chair Michael Sussman
7:45 pm - 9:30 pmThe Forefront of Plant Genomics
7:45 pm - 8:25 pmJoe Ecker (Salk Institute, La Jolla, CA, USA)
"The Arabidopsis interactome"
8:25 pm - 8:35 pmDiscussion
8:35 pm - 9:00 pmSteve Briggs (UC-San Diego, CA, USA)
"Does proteotype determine phenotype?
9:00 pm - 9:10 pmDiscussion
9:10 pm - 9:18 pmAlexander Jones (Carnegie Institution/Stanford, USA)
"The Arabidopsis Membrane-Based Interactome Reveals Novel Network Patterns And Signaling Motifs"
9:18 pm - 9:20 pmDiscussion
9:20 pm - 9:28 pmSixue Chen (University of Florida, USA)
"Quantitative proteomics of guard cell hormone signal transduction"
9:28 pm - 9:30 pmDiscussion
9:30 pmReception and Social
MONDAY
7:30 am - 8:30 amBreakfast
8:30 amGroup Photo
9:00 am - 12:30 pmEpigenomics and the RNA World
Discussion Leader: Craig Pikaard (Indiana University, Bloomington, IN, USA)
9:00 am - 9:25 amRob Martienssen (Cold Spring Harbor Laboratory, NY, USA)
"Reprogramming the epigenome with small RNA"
9:25 am - 9:35 amDiscussion
9:35 am - 10:00 amCraig Pikaard (Indiana University, Bloomington, IN, USA)
"Multisubunit RNA polymerases IV and V and noncoding RNA-mediated silencing"
10:00 am - 10:05 amDiscussion
10:05 amCoffee Break
10:40 am - 11:05 amVincent Colot (IBENS, Paris, France)
"Epigenetic Variation: An Epigenomics and Quantitative Genetics Perspective"
11:05 am - 11:15 amDiscussion
11:15 am - 11:23 amBarbara Baker (UC-Berkeley)
"miRNA regulation of plant innate immune receptors"
11:23 am - 11:25 amDiscussion
11:25 am - 11:33 amChris Rock (Texas Tech Univ.)
"Genetic interactions between rna interference and abscisic acid response pathways"
11:33 am - 11:35 amDiscussion
11:35 am - 11:43 amElinor Thompson (University of Greenwich, UK)
"An Arabidopsis rhomboid protease has roles in the chloroplast and in flower development"
11:43 am - 11:45 amDiscussion
11:45 am - 11:53 amSally Walford (CSIRO, Australia)
"Using genomics to characterise genes controlling cotton fibre initiation pathways"
11:53 am - 11:55 amDiscussion
11:55 am - 12:03 pmMartin Calvino (Rutgers University, USA)
"Comparative genomics of microRNA 169 gene copies across the grass family has practical implications for breeding sorghum with enhanced biofuel traits"
12:03 pm - 12:05 pmDiscussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pmSystems Biology: The Proteome, Metabolome and Ionome of Plants
Discussion Leader: Mary Lou Guerinot (Dartmouth College, Hanover, NH, USA)
7:30 pm - 7:55 pmMary Lou Guerinot (Dartmouth College, Hanover, NH, USA)
"Ins, Outs, Ups and Downs of Ion Homeostasis"
7:55 pm - 8:05 pmDiscussion
8:05 pm - 8:30 pmKatja Baerenfaller (ETH, Zurich, Switzerland)
"Molecular profiling of Arabidopsis leaf growth"
8:30 pm - 8:40 pmDiscussion
8:40 pm - 9:05 pmLloyd Sumner (Noble Foundation, Ardmore, OK, USA)
"Integrated Metabolomics and Triterpene Saponin Biosynthesis in Medicago truncatula"
9:05 pm - 9:10 pmDiscussion
9:10 pm - 9:18 pmLing Li (Iowa State Univ., USA)
"Uncovering novel signaling interactions in the regulation of plant metabolic networks"
9:18 pm - 9:20 pmDiscussion
9:20 pm - 9:28 pmFrank Menke (Utrecht University. Netherlands)
"A Network Biology Approach of Immune Signaling through Phospho-Proteomics"
9:28 pm - 9:30 pmDiscussion
9:30 pmSocial
TUESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmHormone Receptors I
Discussion Leader: Mark Estelle (UC-San Diego, CA, USA)
9:00 am - 9:25 amSheng-Yang He (Michigan State University, East Lansing, MI, USA)
"Cross-talk between jasmonate and gibberellin signaling"
9:25 am - 9:35 amDiscussion
9:35 am - 10:00 amMark Estelle (UC-San Diego, CA, USA)
"The auxin co-receptor system in Arabidopsis"
10:00 am - 10:10 amDiscussion
10:10 amCoffee Break
10:40 am - 11:05 amAlain Goossens (VIB-Ghent University, Belgium)
"The role of ubiquitin ligases in the control of the jasmonate response"
11:05 am - 11:15 amDiscussion
11:15 am - 11:40 amTai Ping Sun (Duke University, Durham, NC, USA)
"GA-GID1-DELLA: A pivotal regulatory module for plant growth and development"
11:40 am - 11:50 amDiscussion
11:50 am - 11:58 amWilliam Gray (Univ. of Minnesota, USA)
"SAUR19 family proteins promote cell expansion"
11:58 am - 12:00 pmDiscussion
12:00 pm - 12:08 pmMichael Muszynski (Iowa State Univ., USA)
"Inappropriate cytokinin signaling alters proximal-distal leaf patterning in maize"
12:08 pm - 12:10 pmDiscussion
12:10 pm - 12:18 pmHilde Nelissen (VIB/Univ. of Ghent, Belgium)
"The maize leaf: an ideal tool to study cell division and cell expansion, the processes driving growth"
12:18 pm - 12:20 pmDiscussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pmHormone Receptors II
Discussion Leader: Sean Cutler (UC-Riverside, CA, USA)
7:30 pm - 7:55 pmZhenbiao Yang (UC-Riverside, CA, USA)
"A new auxin signaling mechanism based on the old ABP1"
7:55 pm - 8:05 pmDiscussion
8:05 pm - 8:30 pmShuqun Zhang (University of Missouri, Columbia, MO, USA)
"Dual-level regulation of stress ethylene induction by MPK3/MPK6 cascade in Arabidopsis"
8:30 pm - 8:40 pmDiscussion
8:40 pm - 9:05 pmSean Cutler (UC-Riverside, CA, USA)
"Chemical and Genetic Dissection of Abscisic Acid Signaling"
9:05 pm - 9:10 pmDiscussion
9:10 pm - 9:18 pmEric Nam (Univ. of Toronto, Canada)
"Functional analyses of ABA signaling genes"
9:18 pm - 9:20 pmDiscussion
9:20 pm - 9:28 pmAlison DeLong (Brown Univ., USA)
"PP2A regulation of ethylene biosynthesis"
9:28 pm - 9:30 pmDiscussion
9:30 pmSocial
WEDNESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmReceptor Kinases and the Phosphorylome
Discussion Leader: Jo Chory (Salk Institute, La Jolla, CA, USA)
9:00 am - 9:25 amJo Chory (Salk Institute, La Jolla, CA, USA)
"Mechanisms of seedling growth"
9:25 am - 9:35 amDiscussion
9:35 am - 10:00 amAntje Heese (University of Missouri, Columbia, MO, USA)
"Role of ligand-induced endocytosis of the flagellin receptor FLS2 in innate immune signaling"
10:00 am - 10:10 amDiscussion
10:10 amCoffee Break
10:40 am - 11:05 amJen Sheen (Harvard Medical School, Boston, MA, USA)
"Probing PK Signaling Networks with Chemical Switches"
11:05 am - 11:15 amDiscussion
11:15 am - 11:40 amRemko Offringa (Leiden University, Netherlands)
"Phosphorylation-mediated switch in auxin transport polarity as an integrator of abiotic signals"
11:40 am - 11:50 amDiscussion
11:50 am - 11:58 amJeff Harper (Univ. of Nevada, USA)
"A cyclic nucleotide-gated channel (CNGC16) is critical for stress tolerance in pollen reproductive development"
11:58 am - 12:00 pmDiscussion
12:00 pm - 12:08 pmAlex Levine (Hebrew Univ. of Jerusalem, Israel)
"Phosphoinositide Signaling Pathways Regulate Abiotic Stress Signaling"
12:08 pm - 12:10 pmDiscussion
12:10 pm - 12:18 pmAstrid Kristensen (Univ. of Copenhagan, Denmark)
"PSY: A family of plant peptides initiating cell growth"
12:18 pm - 12:20 pmDiscussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:00 pm - 7:30 pmBusiness Meeting
Nominations for the next Vice Chair; Fill out Conference Evaluation Forms; Discuss future Site & Scheduling preferences; Election of the next Vice Chair
7:30 pm - 9:30 pmPathogen Signaling
Discussion Leader: Steve Briggs (UC-San Diego, CA, USA)
7:30 pm - 7:55 pmXinnian Dong (Duke University, Durham, NC, USA)
"Dynamic regulation of plant immune response"
7:55 pm - 8:05 pmDiscussion
8:05 pm - 8:30 pmAlisa Huffaker (USDA-ARS, Gainesville, FL, USA)
"Plant Elicitor Peptides: endogenous signals regulating pathogen defense"
8:30 pm - 8:40 pmDiscussion
8:40 pm - 8:48 pmNicole Clay (Yale Univ., USA)
"Identification of glycosyltransferases involved in pathogen recognition in Arabidopsis innate immunity"
8:48 pm - 8:50 pmDiscussion
8:50 pm - 8:58 pmJoanna Jelenska (Univ. of Chicago, USA)
"Defense signaling and energy metabolism are targets of Pseudomonas syringae virulence effector HopI1"
8:58 pm - 9:00 pmDiscussion
9:00 pm - 9:08 pmAlberto Macho (Sainsbury Laboratory, UK)
"The novel short LRR-RK SEL is a positive regulator of PAMP-triggered immunity"
9:08 pm - 9:10 pmDiscussion
9:10 pm - 9:18 pmUrsula Pfitzner (Univ. of Hohenheim, Germany)
"The signaling of the plant hormone salicylic acid through the NIMIN/NPR1 connection"
9:18 pm - 9:20 pmDiscussion
9:20 pm - 9:28 pmShaul Yalovsky (Tel Aviv University, Israel)
"A ROP-calcium signaling module associates with microtubules in regulation of auxin distribution"
9:28 pm - 9:30 pmDiscussion
9:30 pmSocial
THURSDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmDiscoveries in New Signaling Systems
Discussion Leader: Joe Ecker (Salk Institute, La Jolla, CA, USA)
9:00 am - 9:25 amGiles Oldroyd (John Innes Center, Norwich, UK)
"The symbiotic signaling pathway in legumes and non-legumes"
9:25 am - 9:35 amDiscussion
9:35 am - 10:00 amJean-Michel Ane (University of Wisconsin, Madison, WI, USA)
"Medicagomics: an Integrated Proteomic, Phosphoproteomic, Transcriptomic, and Genetic Analysis of Symbiotic Signaling"
10:00 am - 10:10 amDiscussion
10:10 amCoffee Break
10:40 am - 11:05 amAlan M. Jones (University of North Carolina, Chapel Hill, NC, USA)
"Sugar perception and signaling via an unusual RGS protein"
11:05 am - 11:15 amDiscussion
11:15 am - 11:23 amTie Liu (Carnegie Institution/Stanford, USA)
"The Transcriptional Network Analysis of Adaxial-abaxial Polarity in Arabidopsis Leaf Development"
11:23 am - 11:25 amDiscussion
11:25 am - 11:33 amPauline Rival (CNRS, France)
"Roles of the Medicago truncatula DMI3 gene in coordinating epidermal and cortical responses during endosymbiosis with Sinorhizobium meliloti"
11:33 am - 11:35 amDiscussion
11:35 am - 11:43 amTitima Tantikanjana (Cornell Univ., USA)
"Auxin Response Factor 3 (ARF3) functions non-cell-autonomously to regulate self-incompatibility in the Brassicaceae"
11:43 am - 11:45 amDiscussion
11:45 am - 11:53 amHao Yu (National University of Singapore, Singapore)
"A regulator required for florigen transport"
11:53 am - 11:55 amDiscussion
11:55 am - 12:03 pmDong Wang (Stanford Univ., USA)
"Legume DNF2 is Required for the Intracellular Symbiosis with Nitrogen-fixing Rhizobia"
12:03 pm - 12:05 pmDiscussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pmWhat are the Limits of Plant Genetics/Plant Breeding?
Discussion Leader: Simon Chan (UC-Davis, CA, USA)
7:30 pm - 7:55 pmRob Dirks (Rijk Zwaan, Netherlands)
"Plant Breeding Reversed: The making and use of chromosome substitution lines"
7:55 pm - 8:05 pmDiscussion
8:05 pm - 8:30 pmSimon Chan (UC-Davis, CA, USA)
"Chromosome engineering: power tools for plant genetics"
8:30 pm - 8:40 pmDiscussion
8:40 pm - 9:05 pmDan Voytas (University of Minnesota, Saint Paul, MN, USA)
"Precise engineering of plant genomes with sequence-specific nucleases"
9:05 pm - 9:10 pmDiscussion
9:10 pm - 9:18 pmMagdy Mahfouz (KAUST, Saudi Arabia)
"Cracking the Code of the DNA Binding Specificity of Ralstonia TAL-like Effectors"
9:18 pm - 9:20 pmDiscussion
9:20 pm - 9:28 pmKamil Witek (Sainsbury, UK)
"R gene enrichment sequencing (RenSeq) - a quick method to detect polymorphisms co-segregating with functional resistance gene alleles in Solanum species"
9:28 pm - 9:30 pmDiscussion
9:30 pmSocial
FRIDAY
7:30 am - 8:30 amBreakfast
9:00 amDeparture

 
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