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Conference Program
 
Post-Transcriptional Gene Regulation, The Biology of
(This meeting is currently known as "Post-Transcriptional Gene Regulation")
July 15-20, 2012
Salve Regina University
Newport, RI
Chair:
Manuel Ares

Vice Chair:
Melissa Moore

The 2012 Gordon Research Conference (GRC) on The Biology of Post-Transcriptional Gene Regulation will be the fifth in a series that is held every other year. This GRC provides an outstanding forum to present and discuss new findings about the mechanisms and regulation of RNA metabolism in normal and diseased cells and tissues. The emphasis will be on the post-transcriptional transactions during the elongation, splicing, polyadenylation, transport, translation, and decay of mRNA as influenced by regulatory proteins and non-coding RNAs including microRNAs. A broad cross section of methodological approaches including genomic and bioinformatic strategies, single molecule and single cell-based studies, in situ localization, including genetic approaches with model systems as well as molecular phenotypes associated with human disease states. transcriptional coupling, are applied and discussed. Elucidating the basic mechanisms of post-transcriptional gene regulation is essential to gain a full understanding of the organization, function, and evolution of the human genome, and other genomes, as well as of the extensive involvement of RNA-processing dysfunction in numerous genetic and acquired disorders.

The meeting will convene approximately 45 speakers representing key areas of post-transcriptional gene regulation, with a total of 150-180 participants. The program will consist of nine morning or evening sessions that will broadly address cutting-edge issues in the following areas: Nuclear RNA Metabolism: The Transcription Connection; Bioinformatics: Gene Expression and RNAomics, including the evolution of RNA-processing signals and factors; RNA Splicing Catalysis, Regulation and Fidelity; Non-coding RNAs; RNA Transport and Localization; RNA Turnover, including nonsense-mediated mRNA decay and other types of quality control; Translational Control; RNA and RNP Structure; and RNA-processing Dysfunctions in Disease. Short talks will be chosen from abstract submissions. In addition, small (<50 posters) poster sessions on four late afternoons will enable all participants to contribute to, and learn about, the above-mentioned topics. Free early-afternoon and late-evening periods, and meal times, will also stimulate discussion. While the quality of science will be high, the atmosphere is aimed to be relaxed and interactive. Four poster prizes will be awarded: two to graduate students, and two to post-docs.


Contributors

SUNDAY
2:00 pm - 9:00 pmArrival and Check-in (Office Closed 6:00 pm - 7:00 pm)
6:00 pmDinner
7:30 pm - 7:35 pmWelcome / Introductory Comments by GRC Site Staff
7:35 pm - 9:30 pmRegulation of RNA Decay
Discussion Leader: Melissa Moore (HHMI, U Mass Med Ctr)
7:35 pm - 7:55 pmMelissa Moore (HHMI, U Mass Med Ctr)
"Translation-dependent RNA decay"
7:55 pm - 8:05 pmDiscussion
8:05 pm - 8:25 pmSusan Ackerman (HHMI, Jackson Laboratories)
"RNA Processing and Neurological Disease"
8:25 pm - 8:35 pmDiscussion
8:35 pm - 8:55 pmLynne Maquat (Unv of Rochester)
"Death and destruction of mammalian-cell mRNAs"
8:55 pm - 9:05 pmDiscussion
9:05 pm - 9:25 pmJens Lykke-Anderson (UCSD)
"The control of human mRNA turnover"
9:25 pm - 9:30 pmDiscussion
MONDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmCo-Transcriptional RNA Processing Mechanisms
Discussion Leader: Tracy Johnson (UCSD)
9:00 am - 9:20 amDavid Bentley (University of Colorado, Denver)
"Co-transcriptional mRNA processing and elongation"
9:20 am - 9:30 amDiscussion
9:30 am - 9:50 amTracy Johnson (UCSD)
"Coordinating post-transcriptional gene control with histone modification"
9:50 am - 10:00 amDiscussion
10:00 amGroup Photo / Coffee Break
10:30 am - 10:50 amKarla M. Neugebauer (Max Planck Institute)
"Gene expression in its natural habitat: transcription and splicing on chromatin"
10:50 am - 11:00 amDiscussion
11:00 am - 11:20 amXiang-Dong Fu (UCSD)
"SR proteins mediate transcription pause release at gene promoters"
11:20 am - 11:30 amDiscussion
11:30 am - 11:50 amGideon Dreyfuss (HHMI, Unv Penn)
"U1 snRNP: guardian of nascent transcripts and cell growth regulator"
11:50 am - 12:00 pmDiscussion
12:00 pm - 12:20 pmJean Beggs (University of Edinburgh)
"A splicing-coupled transcriptional checkpoint"
12:20 pm - 12:30 pmDiscussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session I
6:00 pmDinner
7:30 pm - 9:30 pmTranslation Mechanisms
Discussion Leader: Wendy Gilbert (MIT)
7:30 pm - 7:50 pmRachel Green (HHMI, Johns Hopkins Med Sch)
"Translation mechanisms"
7:50 pm - 8:00 pmDiscussion
8:00 pm - 8:10 pmShort Presentation: Jonathan S. Weissman (UCSF)
"Monitoring protein synthesis one codon at a time through ribosome profiling"
8:10 pm - 8:15 pmDiscussion
8:15 pm - 8:25 pmShort Presentation: Gloria Brar (UCSF)
"Regulation of the Yeast Meiotic Program Revealed by Ribosome Profiling"
8:25 pm - 8:30 pmDiscussion
8:30 pm - 8:50 pmJeremy Sanford (UC Santa Cruz)
"Translational control of alternative mRNA isoforms"
8:50 pm - 9:00 pmDiscussion
9:00 pm - 9:20 pmWendy Gilbert (MIT)
"Modification and Modulation of the Eukaryotic Translation Machinery"
9:20 pm - 9:30 pmDiscussion
TUESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmGlobal Approaches to Post-transcriptional Gene Regulation
Discussion Leader: Jeremy Sanford (UC Santa Cruz)
9:00 am - 9:20 amMatthias Hentze (EMBL Heidelberg)
"RNA meets metabolism: from mRNA interactomes to REM networks"
9:20 am - 9:30 amDiscussion
9:30 am - 9:50 amGary Schroth (Illumina, Inc)
"Complete Transcriptome Analysis using RNA-Seq"
9:50 am - 10:00 amDiscussion
10:00 amCoffee Break
10:30 am - 10:50 amBrent Graveley (Unv Conn Health Sci Ctr)
"Genomic approaches to studying RNA processing in eukaryotes"
10:50 am - 11:00 amDiscussion
11:00 am - 11:20 amGene Yeo (UCSD)
"Complex RNA regulation by hnRNP proteins, and their involvement in neurodegenerative disorders"
11:20 am - 11:30 amDiscussion
11:30 am - 11:50 amChris Burge (MIT)
"Gene and alternative isoform regulation across mammalian tissue transcriptomes"
11:50 am - 12:00 pmDiscussion
12:00 pm - 12:20 pmRachel Brem (UC Berkeley)
"Genomics and genetics of alternative polyadenylation"
12:20 pm - 12:30 pmDiscussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session II
6:00 pmDinner
7:30 pm - 9:30 pmNoncoding RNA
Discussion Leader: John Rinn (Harvard)
7:30 pm - 7:50 pmJohn Rinn (Harvard)
"Linking RNA to Human Health"
7:50 pm - 8:00 pmDiscussion
8:00 pm - 8:20 pmGordon Carmichael (U. Conn)
"New intron-derived long noncoding RNAs"
8:20 pm - 8:30 pmDiscussion
8:30 pm - 8:50 pmIgor Ulitsky (Whitehead Institute)
"A link between long intervening noncoding RNAs and microRNA regulation"
8:50 pm - 9:00 pmDiscussion
9:00 pm - 9:20 pmMyriam Gorospe (National Institute of Aging, NIH)
"LincRNA-p21 suppresses target mRNA translation"
9:20 pm - 9:30 pmDiscussion
WEDNESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmmicroRNA Processing and Function
Discussion Leader: Shobha Vasudevan (Massachusetts General Hospital Cancer Center)
9:00 am - 9:20 amVictor Ambros (U. Mass Med School)
"microRNAs and development"
9:20 am - 9:30 amDiscussion
9:30 am - 9:50 amShobha Vasudevan (Massachusetts General Hospital Cancer Center)
"Regulated Gene Expression in Quiescence"
9:50 am - 10:00 amDiscussion
10:00 amCoffee Break
10:30 am - 10:50 amJavier Caceres (MRC Edinburgh)
"Regulation of microRNA biogenesis and function"
10:50 am - 11:00 amDiscussion
11:00 am - 11:20 amRichard Gregory (Harvard Med Sch)
"Post-transcriptional control of microRNA expression"
11:20 am - 11:30 amDiscussion
11:30 am - 11:50 amPeter Sarnow (Stanford Unv)
"Protection of hepatitis C virus RNA by mature and precursor microRNA miR-122"
11:50 am - 12:00 pmDiscussion
12:00 pm - 12:20 pmJoan Steitz (HHMI, Yale Unv)
"Viral Noncoding RNAs: Always something different"
12:20 pm - 12:30 pmDiscussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session III
6:00 pmDinner
7:00 pm - 7:30 pmBusiness Meeting
Nominations for the next Vice Chair; Fill out Conference Evaluation Forms; Discuss future Site & Scheduling preferences; Election of the next Vice Chair
7:30 pm - 9:30 pmSplicing Mechanisms
Discussion Leader: Melissa Jurica (UC Santa Cruz)
7:30 pm - 7:50 pmAnna Marie Pyle (HHMI, Yale Unv)
"Visualizing the progress of splicing: a structural perspective on group II introns during the sequential stages of splicing"
7:50 pm - 8:00 pmDiscussion
8:00 pm - 8:20 pmChristine Guthrie (UCSF)
"Aspects of Spliceosomal Dynamics"
8:20 pm - 8:30 pmDiscussion
8:30 pm - 8:50 pmJon Staley (Unv of Chicago)
"Catalyzing pre-mRNA Splicing"
8:50 pm - 9:00 pmDiscussion
9:00 pm - 9:20 pmMelissa Jurica (UC Santa Cruz)
"Caught in the act: tools for arresting human spliceosomes"
9:20 pm - 9:30 pmDiscussion
THURSDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmRNA-Processing Dysfunction in Disease
Discussion Leader: Mariano Garcia-Blanco (Duke Unv)
9:00 am - 9:20 amAdrian Krainer (Cold Spring Harbor Laboratory)
"Antisense Modulation of Alternative Splicing: from the Bench to the Clinic"
9:20 am - 9:30 amDiscussion
9:30 am - 9:40 amShort Presentation: Masatoshi Hagiwara (Kyoto Unv, Japan)
"Chemical exon-skipping therapeutics of muscular dystrophy"
9:40 am - 9:45 amDiscussion
9:45 am - 9:55 amShort Presentation: Ryszard Kole (AVI Biopharma, Inc)
"Exon skipping as treatment for Duchenne muscular dystrophy"
9:55 am - 10:00 amDiscussion
10:00 amCoffee Break
10:30 am - 10:50 amJane Wu (Northwestern University Medical School)
"TDP-43 and its role in Frontotemporal Dementia in ALS"
10:50 am - 11:00 amDiscussion
11:00 am - 11:20 amMaurice S. Swanson (Unv of Florida)
"Alternative splicing regulation during brain development and dysregulation in neurologic disease"
11:20 am - 11:30 amDiscussion
11:30 am - 11:50 amTom Cooper (Baylor College of Medicine)
"Alternative splicing regulatory networks in development and disease"
11:50 am - 12:00 pmDiscussion
12:00 pm - 12:20 pmMariano Garcia-Blanco (Duke Unv)
"RNA-protein interactions caught in the love-hate relationship between dengue virus and the host cell"
12:20 pm - 12:30 pmDiscussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session IV
6:00 pmDinner
7:30 pm - 9:30 pmRNA Localization
Discussion Leader: Vivian Budnik (U Mass Medical Center)
7:30 pm - 7:50 pmRobert H. Singer (HHMI, Einstein College of Medicine)
"Following single mRNAs from synthesis to decay in living cells"
7:50 pm - 8:00 pmDiscussion
8:00 pm - 8:20 pmAnne Ephrussi (EMBL Heidelberg)
"Assembly and regulation of an RNA transport complex"
8:20 pm - 8:30 pmDiscussion
8:30 pm - 8:50 pmKelsey Martin (HHMI, UCLA)
"RNA localization and translation in neurons"
8:50 pm - 9:00 pmDiscussion
9:00 pm - 9:20 pmVivian Budnik (U Mass Medical Center)
"Regulating synapse development through a novel mechanism of nucleoprotein particle export"
9:20 pm - 9:30 pmDiscussion
9:30 pm - 12:00 amSoiree at Ochre Court
FRIDAY
7:30 am - 8:30 amBreakfast
9:00 amDeparture

 
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