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Conference Program
 
Protein Folding Dynamics
January 8-13, 2012
Ventura Beach Marriott
Ventura, CA
Chair:
Dave Thirumalai

Vice Chair:
Sheena E. Radford

Related Meeting Information
The Protein Folding Dynamics Gordon Research Conference was held in conjunction with the Protein Folding Dynamics Gordon Research Seminar. Please refer to the Protein Folding Dynamics GRS web page for more information.

The 2012 Gordon Research Conference on Protein Folding Dynamics will bring together experimentalists and theoreticians to discuss basic issues in protein folding dynamics and their role in a number of applications. It has become increasingly clear that understanding the basic aspects of Protein Folding Dynamics is crucial in describing virtually all processes ranging from transcription to motility of motors and diseases related to misfolding. In order to solve the fundamental problems protein folding and dynamics it has been recognized that a multifaceted approach that incorporates developments in singe molecule methods, advances in theory and simulations, and the more traditional techniques such as NMR and ensemble methods is needed. Recent advances both in theory and experiments now demand a more quantitative approach in this vital area of research, and have made it necessary for discussions between theorists and experimentalists. To explore the most recent exciting developments the conference will bring together diverse background to assemble in a forum that will encourage open discussions. The meeting will bring together scientists with expertise in chemistry, physics, and biology to share the latest developments in theory and experiments. The Gordon Research Conference in Protein Folding Dynamics was established specifically to bring experiment and theory together to explore advances in the field. The program will cover a range of topics, not restricted to, in vitro and in vivo folding, protein aggregation, and functional role of protein dynamics with implications for transcription and molecular motors. The conference will strive to encourage interactions between junior scientists and graduate students by including a few of them to present their work through abstract-selected presentations and posters. Graduate students and post-doctoral fellows are encouraged to attend the accompanying Gordon Research Seminar in Protein Folding Dynamics which will include an overview of the field as well as an opportunity to present research results.


Contributors

SUNDAY
4:00 pm - 8:00 pmArrival and Check-in (Office Closed 6:00 pm - 7:45 pm)
6:00 pmDinner
7:30 pm - 7:40 pmWelcome / Introductory Comments by GRC Site Staff
7:40 pm - 9:30 pmKeynote Presentation
Discussion Leader: Peter Wolynes (Rice University)
7:40 pm - 8:20 pmJane Clarke (University of Cambridge)
"Experimental Explorations of Folding Landscapes"
8:20 pm - 8:35 pmDiscussion
8:35 pm - 9:15 pmJose Onuchic (Rice University)
"The Energy Landscape for Folding and Function: From Small Proteins to Molecular Machines"
9:15 pm - 9:30 pmDiscussion
MONDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmProtein Folding Experiments
Discussion Leader: Terry G. Oas (Duke University)
9:10 am - 9:35 amVictor Munoz (Centro de Investigaciones Biológicas - CSIC)
"Mapping the Folding Interaction Network of the Ultrafast Folding Protein GPW at Atomic Resolution by NMR"
9:35 am - 9:45 amDiscussion
9:45 am - 9:55 amTBA
9:55 am - 10:00 amDiscussion
10:00 am - 10:30 amGroup Photo / Coffee Break
10:30 am - 10:55 amSusan Marqusee (University of California, Berkeley)
10:55 am - 11:05 amDiscussion
11:05 am - 11:30 amJayant Udgaonkar (National Centre for Biological Sciences)
"Structural Events During Protein Unfolding"
11:30 am - 11:40 amDiscussion
11:40 am - 12:05 pmBen Schuler (University of Zurich)
"The Role of Internal Friction in Protein Folding from Single Molecule Spectroscopy"
12:05 pm - 12:15 pmDiscussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pmProtein Folding Theory and Simulations
Discussion Leader: Charles Brooks (University of Michigan)
7:40 pm - 8:05 pmGaryk Papoian (University of Maryland)
"Exploring Protein and DNA Energy Landscapes with Atomistic and Coarse-Grained Simulations"
8:05 pm - 8:15 pmDiscussion
8:15 pm - 8:40 pmKoby Levy (Weizmann Institute)
"Folding and Function: Regulation by Post-Translational Modifications"
8:40 pm - 8:50 pmDiscussion
8:50 pm - 9:15 pmV. Barsegov (University of Massachusetts, Lowell)
"Mechanism of Fibrin (Ogen) Force-Induced Upfolding"
9:15 pm - 9:25 pmDiscussion
TUESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmMisfolding and Aggregation
Discussion Leader: Joan-Emma Shea (University of California, Santa Barbara)
9:10 am - 9:35 amAshok Deniz (Scripps Research Institute)
"Probing Protein Disorder and Misfolding at Single-Molecule Resolution"
9:35 am - 9:45 amDiscussion
9:45 am - 9:55 amTBA
9:55 am - 10:00 amDiscussion
10:00 am - 10:30 amCoffee Break
10:30 am - 10:55 am Ruth Nussinov (National Cancer Institute)
"Allostery and Conformational Control in Signaling: The Ubiquitin E3 Ligase"
10:55 am - 11:05 amDiscussion
11:05 am - 11:30 amReed Wickner (NIH)
"Prion Structure Explains Prion Biology: A Mechanism of Conformational Templating"
11:30 am - 11:40 amDiscussion
11:40 am - 12:05 pmCarol Hall (North Carolina State University)
"Computer Simulations of Protein Aggregation and Fibrillization"
12:05 pm - 12:15 pmDiscussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pmTowards Cellular Folding
Discussion Leader: Adrian H. Elcock (University of Iowa)
7:40 pm - 8:05 pm Margaret Cheung (University of Houston)
"Protein Structure, Stability and Folding in the Cell - In Silico Approaches"
8:05 pm - 8:15 pm Discussion
8:15 pm - 8:40 pm Roland Beckman (University of Munich)
8:40 pm - 8:50 pm Discussion
8:50 pm - 9:15 pm Jin Wang (SUNY Stony Brook)
9:15 pm - 9:25 pm Discussion
WEDNESDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmSingle Molecule Methods
Discussion Leader: Matthias Rief (Technische Universitat Munchen - TUM)
9:10 am - 9:35 am Gilad Haran (Weizmann Institute)
"Single-Molecule Fluorescence Studies in Folding"
9:35 am - 9:45 am Discussion
9:45 am - 9:55 am Zechun Zhang (University of Maryland)
"Kinematics of Kinesin step"
9:55 am - 10:00 am Discussion
10:00 am - 10:30 am Coffee Break
10:30 am - 10:55 am Olga Dudko (University of California, San Diego)
"Force-Dependent Kinetics of Protein Folding: Theory Meets Experiment"
10:55 am - 11:05 am Discussion
11:05 am - 11:30 am David Brockwell (University of Leeds)
11:30 am - 11:40 am Discussion
11:40 am - 12:05 pm Hongbin Li (University of British Columbia)
"Protein Unfolding Dynamics Probed by Single Molecule Force Spectroscopy"
12:05 pm - 12:15 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:00 pm - 7:30 pmBusiness Meeting
Nominations for the next Vice Chair; Fill out Conference Evaluation Forms; Discuss future Site & Scheduling preferences; Election of the next Vice Chair
7:30 pm - 9:30 pmProteins in Action
Discussion Leader: George Stan (University of Cincinnati)
7:40 pm - 8:05 pm Seth Darst (Rockefeller University)
"Structural Studies of Bacterial Transcription Initiation"
8:05 pm - 8:15 pm Discussion
8:15 pm - 8:40 pm Arieh Warshel (University of Southern California)
"Multiscale Modeling of Protein Functions"
8:40 pm - 8:50 pm Discussion
8:50 pm - 9:15 pm James Spudich (Stanford University)
"The Human Cardiac Contractile Apparatus: Unraveling the Cause of Hypertrophic and Dilated Cardiomyopathies"
9:15 pm - 9:25 pm Discussion
THURSDAY
7:30 am - 8:30 amBreakfast
9:00 am - 12:30 pmRNA Folding and RNA-Protein Interactions
Discussion Leader: Changbong Hyeon (Korea Institute of Advanced Study)
9:10 am - 9:35 am Arthur LaPorta (University of Maryland)
"Single Molecule Study of the Mechanism of Programmed - 1 Ribosomal"
9:35 am - 9:45 am Discussion
9:45 am - 9:55 am TBA
9:55 am - 10:00 am Discussion
10:00 am - 10:30 am Coffee Break
10:30 am - 10:55 am Robert Batey (Colorado University)
"RNA Folding as a Central Feature of Regulation of Gene Expression by Riboswitches"
10:55 am - 11:05 am Discussion
11:05 am - 11:30 am Rick Russell (University of Texas)
"DEAD-box 'Helicase' Proteins as Chaperones of RNA Folding"
11:30 am - 11:40 am Discussion
11:40 am - 12:05 pm Shi-Je Chen (University of Missouri)
"Physics-Based De Novo Prediction of RNA 3D Structures"
12:05 pm - 12:15 pm Discussion
12:30 pmLunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pmPoster Session
6:00 pmDinner
7:30 pm - 9:30 pmTowards the Future
Discussion Leaders: Dave Thirumalai (University of Maryland) and Sheena Radford (University of Leeds)
7:40 pm - 8:05 pm Ken Dill (University of California, San Francisco)
"Protein Folding Modeling: Where is the Future?"
8:05 pm - 8:15 pm Discussion
8:15 pm - 8:40 pm William Eaton (NIH)
"What Does it Mean to Understand Protein Folding?"
8:40 pm - 8:50 pm Discussion
8:50 pm - 9:15 pm Lila Gierasch (University of Massachusetts)
"A challenge for the future: moving our understanding of folding in vitro into the in vivo world"
9:15 pm - 9:25 pm Discussion
FRIDAY
7:30 am - 8:30 amBreakfast
9:00 amDeparture

 
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