Conference Program
 
COMPUTATIONAL CHEMISTRY

July 4-9, 2004
Holderness School
Holderness, NH

Chair:
William C. Swope

Vice Chair:
Wilfred F. Van Gunsteren

Computational chemistry is the study of molecular systems by computational techniques. These techniques include quantum chemistry, molecular dynamics and Monte Carlo, combinations of them, and, more recently, data mining and informatics. The field of computational chemistry has had extensive impact in the areas of drug design, materials science, environmental chemistry and chemical engineering. This meeting is for leaders in the field of computational chemistry algorithm development and those engaged in its application to important scientific and technological problems.

The development of new and efficient algorithms that enable us to address larger and more diverse types of materials and phenomena, together with the greater availability of low cost computing, have caused a large increase in the use of computational chemistry techniques in areas such as computational biology and nanotechnology.

The 2004 conference will not only continue its traditional emphasis (applications of computational chemistry to biological phenomena), it will also expand its scope to include topics not previously addressed, such as those related to molecular bio-nanotechnology and environmental computational chemistry. A number a experimentalists have also been invited to challenge the theoretical chemistry community with new and interesting problems in technologically significant and fundable areas.


The organizers are very appreciative to the following corporate contributors:

IBM Corporation (Research Division, Life Sciences/Healthcare Business Unit
and the Deep Computing Division)

Sun Microsystems (Global Education and Research)

Hewlett Packard (Life and Material Sciences)


SUNDAY
2:00 pm - 9:00 pmArrival and check-in
6:00 pm Dinner
7:30 pm - 9:30 pmHIGH ENERGY MATERIALS AND COMBUSTION
Discussion Leader: Timothy Lee (NASA-Ames Research Center)
7:30 pm - 8:00 pm Larry Fried (Lawrence Livermore National Laboratory)
"Atomistic Modeling of Condensed Phase Detonations"
8:00 pm - 8:10 pmDiscussion
8:10 pm - 8:40 pmStephen Klippenstein (Sandia National Laboratories)
"From Quantum Chemistry to Kinetic Phenomenology for Combustion Reactions"
8:40 pm - 8:50 pmDiscussion
8:50 pm - 9:20 pm Tony Dean (Colorado School of Mines)
"Role of Gas-Phase Kinetics in High-Temperature Solid-Oxide Fuel Cells"
9:20 pm - 9:30 pmDiscussion
9:30 pm Reception
MONDAY
7:30 am - 8:30 amBreakfast
8:45 am Conference Photo
9:00 am - 12:30 pmENZYMATIC REACTIONS
Discussion Leader: Julia Rice (IBM Research)
9:00 am - 9:35 am Per Siegbahn (Stockholm University)
"Quantum Chemical Studies of Redox Active Metal Centers in Enzymes"
9:35 am - 9:45 amDiscussion
9:45 am - 10:15 amCoffee Break
10:15 am - 10:50 am Jiali Gao (U. Minn.) [Michael Zerner Memorial Lecture]
"Dynamics of Enzymatic Reactions from Combined QM/MM Simulations"
10:50 am - 11:00 am Discussion
11:00 am - 11:35 amAdrian Mulholland (U. Bristol)
"QM/MM Modelling of Enzyme Reactions"
11:35 am - 11:45 amDiscussion
11:45 am - 12:20 pm Simone Raugei (International School for Advanced Studies, Trieste, Italy)
"Car-Parrinello Molecular Dynamics Studies of Enzymatic Processes"
12:20 pm - 12:30 pmDiscussion
12:30 pm Lunch
1:30 pm - 4:00 pmFree Time
4:00 pm - 6:00 pm Poster Session (GROUP 1)
6:00 pm Dinner
7:30 pm - 9:30 pm AQUEOUS SYSTEMS
Discussion Leader: Teresa Head-Gordon (U. Calif. Berkeley)
7:30 pm - 8:00 pm Steven Corcelli (U. Wisconsin)
"Computational Strategies for Ultrafast Vibrational Spectroscopy: Applications to Water and Aqueous Solutions"
8:00 pm - 8:10 pmDiscussion
8:10 pm - 8:40 pmBranka Ladanyi (Colorado State University)
"Solvation Dynamics in Heterogeneous Environments"
8:40 pm - 8:50 pmDiscussion
8:50 pm - 9:20 pm Yuko Okamoto (Institute for Molecular Science, Okazaki, Aichi, Japan)
"Protein Force Fields: Comparisons and Improvements"
9:20 pm - 9:30 pmDiscussion
9:30 pm Poster Session (Group 1)
TUESDAY
7:30 am - 8:30 am Breakfast
9:00 am - 12:30 pm COMPUTATIONAL CHEMISTRY FOR THE ENVIRONMENT
Discussion Leader: Joe Francisco (Perdue Univ.)
9:00 am - 9:35 amDonald J. Wuebbles (U. Illinois)
"Challenges in Atmospheric Chemistry"
9:35 am - 9:45 amDiscussion
9:45 am - 10:15 amCoffee Break
10:15 am - 10:50 am James T. "Casey" Hynes (ENS, Paris; U. Colorado)
"Theoretical Chemistry for Heterogeneous Reactions of Importance in the Stratosphere"
10:50 am - 11:00 am Discussion
11:00 am - 11:35 amTimothy Lee (NASA-Ames Research Center)
"Investigation of Possible Stratospheric Bromine Reservoir Species: Are Hypercoordinated Bromine Oxides Photostable?"
11:35 am - 11:45 amDiscussion
11:45 am - 12:20 pm Andy Felmy (Pacific Northwest National Laboratory)
"Molecular Simulation of Clusters and Surfaces in Contact with Solution: Applications in Geosciences and High Level Waste Processing"
12:20 pm - 12:30 pmDiscussion
12:30 pm Lunch
1:30 pm - 4:00 pm Free Time
4:00 pm - 6:00 pm Poster Session (GROUP 1)
6:00 pmDinner
7:30 pm - 9:30 pm INFORMATICS
Discussion Leader: Curtis Breneman (RPI)
7:30 pm - 8:00 pm Raymond Mountain (NIST)
"The Industrial Fluid Properties Simulation Challenge"
8:00 pm - 8:10 pmDiscussion
8:10 pm - 8:40 pm C. David Page, Jr. (U. Wisc.)
"Multi-relational Data Mining for Cheminformatics"
8:40 pm - 8:50 pm Discussion
8:50 pm - 9:20 pm Matthew Tirrell (U. Calif. Santa Barbara)
"Frontiers of Computational Chemistry: Ideas from the National Research Council Report"
9:20 pm - 9:30 pm Discussion
9:30 pm Poster Session (Group 1)
WEDNESDAY
7:30 am - 8:30 am Breakfast
9:00 am - 12:30 pmMOLECULAR NANOTECHNOLOGY
9:00 am - 9:20 am Discussion Leader: Anantha Krishnan (DARPA)
9:20 am - 10:00 am Jimmy Xu (Brown Univ.)
"Interfacing Biomolecules and Nanoelectronic Devices"
10:00 am - 10:10 amDiscussion
10:10 am - 10:40 am Coffee Break
10:40 am - 11:20 am Arup Chakraborty (U. Calif. Berkeley)
"Intercellular Communication in the Immune System: Lessons for Biomimetic Sensors"
11:20 am - 11:30 amDiscussion
11:30 am - 12:10 pm Marc Baldo (Massachusetts Institute of Technology)
"Photosynthetic electronics"
12:10 pm - 12:20 pm Discussion
12:30 pm Lunch
1:30 pm - 4:00 pm Free Time
4:00 pm - 6:00 pmPoster Session (GROUP 2)
6:00 pm Dinner
7:30 pm - 9:30 pmADVANCED METHODS
Discussion Leader: Jed Pitera (IBM Research)
7:30 pm - 8:00 pmMichiel Sprik (Cambridge University)
"Computation of Redox Potentials and Electronic Spectra of Transition Metal Aqua Ions; A New Application of the Car-Parrinello Method"
8:00 pm - 8:10 pm Discussion
8:10 pm - 8:40 pm Charles Brooks (The Scripps Research Institute)
"Exploring Coupled pH and Protein Conformational Changes with Molecular Simulations"
8:40 pm - 8:50 pmDiscussion
8:50 pm - 9:20 pm Philippe Hunenberger (ETH)
"New schemes for evaluating electrostatic interactions in molecular systems under periodic boundary conditions"
9:20 pm - 9:30 pmDiscussion
9:30 pm Poster Session (Group 2)
THURSDAY
7:30 am - 8:30 am Breakfast
9:00 am - 12:30 pmPROTEIN PHENOMENA
Discussion Leader: Carlos Simmerling (SUNY Stony Brook)
9:00 am - 9:35 amGilad Haran (Weizmann Inst. of Science)
"Single-molecule fluroescence studies of protein folding and dynamics"
9:35 am - 9:45 am Discussion
9:45 am - 10:15 am Coffee Break
10:15 am - 10:50 amJed Pitera (IBM Research) [Peter Kollman Memorial Lecture]
"Blue Gene: From Folding to Function"
10:50 am - 11:00 amDiscussion
11:00 am - 11:35 am Joan-Emma Shea (U. Calif. Santa Barbara)
"Role of Frustration in Chaperonin Mediated Protein Folding"
11:35 am - 11:45 amDiscussion
11:45 am - 12:20 pm Maria Kurnikova (Carnegie-Mellon University)
"Hierarchical Methods for Modeling Membrane Protein Structure and Function"
12:20 pm - 12:30 pm Discussion
12:30 pm Lunch
1:30 pm - 4:00 pm Free Time
4:00 pm - 6:00 pm Poster Session (GROUP 2)
6:00 pm Dinner
7:30 pm - 7:45 pm Conference Business Meeting
7:45 pm - 9:30 pmCLOSING TALKS
Discussion Leader: Jay Ponder (Washington University Medical School)
7:45 pm - 8:10 pm Two 10-minute Poster Presentations
8:10 pm - 8:40 pm Martin Head-Gordon (U. Calif. Berkeley)
"Localized orbitals and fast correlation methods"
8:40 pm - 8:50 pmDiscussion
8:50 pm - 9:20 pmAnthony Stone (Cambridge University)
"Ab initio calculation of intermolecular potential energy surfaces"
9:20 pm - 9:30 pm Discussion
9:30 pm Poster Session (Group 2)
FRIDAY
7:30 am - 8:30 amBreakfast
9:00 am Departure

Last Updated: August 14, 2006