| SUNDAY |
| 4:00 pm - 8:00 pm | Arrival and Check-in (Office Closed 6:00 pm - 7:00 pm) |
| 6:00 pm | Dinner |
| 7:30 pm - 7:40 pm | Welcome / Introductory Comments by GRC Site Staff |
| 7:40 pm - 9:30 pm | The Genetic and Epigenetic Landscape of Cancer |
| Discussion Leader: Jean-Pierre Issa (MD Anderson Cancer Center) |
| 7:40 pm - 8:00pm | Elaine Mardis (Washington University) "Whole genome sequencing and analysis of cancer cells" |
| 8:00 pm - 8:05 pm | Discussion |
| 8:05 pm - 8:25 pm | Joe Costello (UCSF) "Evolutionarily conserved genetic and epigenetic determinants of gene expression in normal cells and cancer" |
| 8:25 pm - 8:30 pm | Discussion |
| 8:30 pm - 8:50 pm | Kristian Helin (Biotech Research & Innovation Centre) "Role of lysine methyl transferases and demethylases in stem cells and cancer" |
| 8:50 pm - 9:00 pm | Discussion |
| 9:00 pm - 9:20pm | Laura Van't Veer (UCSF) |
| 9:20 pm - 9:30 pm | Discussion |
| MONDAY |
| 7:30 am - 8:30 am | Breakfast |
| 9:00 am - 12:30 pm | Mutation and methylation profiles of cancer |
| Discussion Leader: Peter Laird (USC) |
| 9:00 am - 9:20 am | Will Parsons (Johns Hopkins University) "Genomic analysis of glioblastoma multiforme" |
| 9:20 am - 9:30 am | Discussion |
| 9:30 am - 9:50 am | Michael Stratton (Wellcome Trust Sanger Institute) "Patterns of somatic mutation in human cancer genomes" |
| 9:50 am - 10:00 am | Discussion |
| 10:00 am | Coffee Break / Group Photo |
| 10:30 am - 10:50 am | Peggy Farnham (UC Davis Genome Center Genome and Biomedical Sciences Facility) "Using ChIP-chip technology to investigate chromatin silencing in normal and tumor cells" |
| 10:50 am - 11:00 am | Discussion |
| 11:00 am - 11:20 am | Gerd Pfeifer (City of Hope) "Genome-wide DNA methylation profiling reveals mechanisms of cancer-associated methylation changes" |
| 11:20 am - 11:30 am | Discussion |
| 11:30 am - 11:50 am | Mary Hendrix (Childrens Memorial) "Epigenetically Reprogramming Metastatic Tumor Cells with an Embryonic Microenvironment" |
| 11:50 am - 12:00 pm | Discussion |
| 12:00 pm - 12:20 pm | Anne O'Donnell (Columbia University) "Cytosine Methylation and Breast Cancer" |
| 12:20pm - 12:30 pm | Discussion |
| 12:30 pm | Lunch |
| 1:30 pm - 4:00 pm | Free Time |
| 4:00 pm - 6:00 pm | Poster Session |
| 6:00 pm | Dinner |
| 7:30 pm - 9:30 pm | Integrated genomic/epigenomic approaches |
| Discussion Leader: Joe Costello (UCSF) |
| 7:30 pm - 7:50 pm | Jim Downing (St. Jude Children’s Research Hospital) "The molecular Pathology of Acute Leukemia: recent insights from genome-wide copy number analysis" |
| 7:50 pm - 8:00pm | Discussion |
| 8:00 pm - 8:20 pm | Lanlan Shen (MD Anderson Cancer Center) "Integrated analysis of genetic and epigenetic alterations in cancer" |
| 8:20 pm - 8:30 pm | Discussion |
| 8:30 pm - 8:50 pm | Anne-Lise Borresen-Dale (The Norwegian Radium Hospital) "Integrated genomic/epigenomic approaches applied to breast cancer" |
| 8:50 pm - 9:00 pm | Discussion |
| 9:00 pm - 9:20 pm | James Hicks (Cold Spring Harbor Laboratory) "Programs of epigenetic and genetic alteration in breast cancer observed in human tumors and mouse model systems" |
| 9:20 pm - 9:30 pm | Discussion |
| TUESDAY |
| 7:30 am - 8:30 am | Breakfast |
| 9:00 am - 12:30 pm | Genetic and epigenetic instabilities |
| Discussion Leader: Thea Tlsty (UCSF) |
| 9:00 am - 9:20 am | Fred Alt (HHMI/Children's Hospital/CBR Institute) "DNA Double Strand Breaks, Translocations and Lymphoma" |
| 9:20 am - 9:30 am | Discussion |
| 9:30 am - 9:50 am | Ralph Scully (Harvard Institutes of Medicine) "Role of the chromatin response in mammalian double strand break repair" |
| 9:50 am - 9:55 am | Discussion |
| 9:55 am - 10:15 am | Peter Laird (USC) "Origins of Aberrant Cancer DNA Methylation Profiles" |
| 10:15 am - 10:20 am | Discussion |
| 10:20 am - 10:35 am | Coffee Break |
| 10:35 am - 10:50 am | Marcos Estecio (University of Texas M.D. Anderson Cancer Center) "A genome architecture marked by SINE and LINE repeats modulates CpG island predisposition to de novo methylation in cancer" |
| 10:50 am - 10:55 am | Discussion |
| 10:55 am - 11:15 am | Siavash Kurdistani (David Geffen School of Medicine at UCLA) "Epigenetic Reprogramming for Oncogenic Transformation" |
| 11:15 am - 11:25 am | Discussion |
| 11:25 am - 11:45 am | Renato Paro (D-BSSE) "Chaperoning epignetic control" |
| 11:45 am - 11:50 am | Discussion |
| 11:50 am - 12:05 pm | Elizaveta Benevolenskaya (University of Illinois at Chicago) "Control of gene expression by the RBP2 histone demethylase" |
| 12:05 pm - 12:10 pm | Discussion |
| 12:10 pm - 12:25 pm | Janos Minarovits (Microbiological Res. Group, Nat'l Center Epidemiology) "Epstein-Barr virus latency type-independent binding of CTCF to the 5' region of the latent viral promoter Cp" |
| 12:25 pm - 12:30 pm | Discussion |
| 12:30 pm | Lunch |
| 1:30 pm - 4:00 pm | Free Time |
| 4:00 pm - 6:00 pm | Poster Session |
| 6:00 pm | Dinner |
| 7:30 pm - 9:30 pm | Mechanisms underlying molecular alterations in cancer |
| Discussion Leader: Cheryl Walker (MD Anderson Cancer Center) |
| 7:30 pm - 7:50 pm | Allen Yang (USC) "What drives DNA methylation changes in cancer?" |
| 7:50 pm - 8:00 pm | Discussion |
| 8:00 pm - 8:20 pm | Randy Jirtle (Duke) "Epigenetics: The New Genetics of Cancer Susceptibility" |
| 8:20 pm - 8:30 pm | Discussion |
| 8:30 pm - 8:50 pm | Cheryl Walker (MD Anderson Cancer Center) "Fetal effects in carcinogenesis" |
| 8:50 pm - 9:00 pm | Discussion |
| 9:00 pm - 9:15 pm | Peter Molloy (CSIRO Molecular & Health Technologies) "Activity of DNA Methyltransferases on RNA:DNA Hybrids and R-loop Structures" |
| 9:15 pm - 9:20 pm | Discussion |
| WEDNESDAY |
| 7:30 am - 8:30 am | Breakfast |
| 9:00 am - 12:30 pm | Mechanism underlying molecular alterations in cancer |
| Discussion Leader: Gigi Lozano (MD Anderson Cancer Center) |
| 9:00 am - 9:20 am | Tak Mak (Princess Margaret Hospital) "Regulation of Metabolism and Apoptosis by PTEN" |
| 9:20 am - 9:30 am | Discussion |
| 9:30 am - 9:50 am | Sandy Chang (MD Anderson Cancer Center) "Genomic instability and cancer in mouse models with telomere dysfunction" |
| 9:50 am - 10:00 am | Discussion |
| 10:00 am - 10:20 am | Gigi Lozano (MD Anderson Cancer Center) "Modifiers of a Cancer Phenotype" |
| 10:20 am - 10:30 am | Discussion |
| 10:30 am - 10:50 am | Coffee Break |
| 10:50 am - 11:10 am | Gerard Evan (UCSF) "Activating Tumor Suppressor Pathways" |
| 11:10 am - 11:20 am | Discussion |
| 11:20 am - 11:45 am | Nancy Dumont (UCSF) "Epigenetic Modifications Associated with Mammory Tumor Progression" |
| 11:45 am - 12:00 pm | Discussion |
| 12:00 pm - 12:15 pm | Richard White (Dana Farber Cancer Institute/Children's Hospital) "Zebrafish chemical genetics links embryogenesis to tumorigenesis" |
| 12:15 pm - 12:25 pm | Discussion |
| 12:30 pm | Lunch |
| 1:30 pm - 4:00 pm | Free Time |
| 4:00 pm - 6:00 pm | Poster Session |
| 6:00 pm | Dinner |
| 7:00 pm - 7:30 pm | Business Meeting |
| (Nominations for the next Vice Chair; Fill out Conference Evaluation Forms; Discuss future Site & Scheduling preferences; Election of the next Vice Chair) |
| 7:30 pm - 9:30 pm | Targeted Therapies |
| Discussion Leader: Peter Jones (USC) |
| 7:30 pm - 7:50 pm | Fadlo Khuri (Winship Cancer Institute) "Chasing Oncogene Addiction into the Clinic" |
| 7:50 pm - 8:00 pm | Discussion |
| 8:00 pm - 8:20 pm | Peter Jones (USC) "Epigenetic therapy" |
| 8:20 pm - 8:30 pm | Discussion |
| 8:30 pm - 8:50 pm | Susan Bates (National Cancer Institute) "HDAC inhibitors, mechanisms of actions, and clinical translations" |
| 8:50 pm - 9:00 pm | Discussion |
| 9:00 pm - 9:20 pm | Robert Brown (University College London) "Targeting acquired drug resistance of ovarian cancer" |
| 9:20 pm - 9:30 pm | Discussion |
| THURSDAY |
| 7:30 am - 8:30 am | Breakfast |
| 9:00 am - 12:30 pm | Genetics and epigenetics of cancer: New directions |
| Discussion Leader: Kristian Helin (Biotech Research & Innovation Centre) |
| 9:00 am - 9:20 am | Bruno Amati (European Institute of Oncology) "Analysis of Myc-induced histone modifications" |
| 9:20 am - 9:25 am | Discussion |
| 9:25 am - 9:45 am | Michael Green (Howard Hughes Medical Institute) "Oncogene-Induced Epigenetic Silencing" |
| 9:45 am - 9:55 am | Discussion |
| 9:55 am - 10:10 am | Joseph Lipsick (Stanford University School of Medicine) "Epigenetic Regulation of Gene Expression by the Drosophila Myb Oncoprotein and the E2F-RB Tumor Suppressor Complex" |
| 10:10 am - 10:15 am | Discussion |
| 10:15 am - 10:30 am | Barbara Panning (University of California, San Francisco) "The tumor suppressor Tip60 has a unique role in maintenance of stem cell identity" |
| 10:30 am - 10:35 am | Discussion |
| 10:35 am - 10:45 am | Coffee Break |
| 10:45 am - 11:10 am | Terumi Kohwi-Shigematsu (University of California) "SATB1-induced epigenetic changes in breast cancer" |
| 11:10 am - 11:20 am | Discussion |
| 11:20 am - 11:40 am | Steve Baylin (Johns Hopkins) "DNA Methylation in stem cell and cancer" |
| 11:40 am - 11:50 am | Discussion |
| 11:50 am - 12:05 pm | Hiroyuki Aburatani (University of Tokyo) "Integrated analysis of genetic and epigenetic alterations in liver cancer" |
| 12:05 pm - 12:10 pm | Discussion |
| 12:10 pm - 12:25 pm | Calum Macaulay (BC Cancer Agency/ BC Cancer Research Centre) "Detection of Clonal Clusters of Cell with Genetic Profiles Associated with Specific Biological Behavior in Clinical Material" |
| 12:25 pm - 12:30 pm | Discussion |
| 12:30 pm | Lunch |
| 1:30 pm - 4:00 pm | Free Time |
| 4:00 pm - 6:00 pm | Poster Session |
| 6:00 pm | Dinner |
| 7:30 pm - 9:30 pm | Genetics and epigenetics of cancer: New directions |
| Discussion Leader: Susan Clark (The Garvan Institute of Medical Research) |
| 7:30 pm - 7:50 pm | Susan Clark (The Garvan Institute of Medical Research) "Chromatin domains in cancer" |
| 7:50 pm - 8:00 pm | Discussion |
| 8:00 pm - 8:20 pm | Francois Radvanyi (Institut Curie - CNRS) "Gene expression profiling in cancer" |
| 8:20 pm - 8:30 pm | Discussion |
| 8:30 pm - 8:50 pm | George Reid (European Molecular Biology Laboratory) "Cyclical methylation of promoter DNA" |
| 8:50 pm - 9:00 pm | Discussion |
| 9:00 pm - 9:20 pm | Daniel Vidal (Ludwig Institute for Cancer Research) "Genome-wide analysis of allelic differential expression using allele-specific SAGE tags" |
| 9:20 pm - 9:30 pm | Discussion |
| FRIDAY |
| 7:30 am - 8:30 am | Breakfast |
| 9:00 am | Departure |