| SUNDAY |
| 2:00 pm - 9:00 pm | Arrival and Check-in (Office Closed 6:00 pm - 7:00 pm) |
| 6:00 pm | Dinner |
| 7:30 pm - 7:40 pm | Welcome / Introductory Comments by GRC Site Staff |
| 7:40 pm - 9:30 pm | Current Discoveries in Experimental and Theoretical Analysis of Protein Folding Dynamics |
| Discussion Leader: Jane Clarke (University of Cambridge, UK) |
| 7:40 pm - 8:20 pm | Lewis Kay (University of Toronto)
"Seeing the Invisible by Solution NMR Spectroscopy"
|
| 8:20 pm - 8:35 pm | Discussion |
| 8:35 pm - 9:15 pm | Angel Garcia (Rensselaer Polytechnic Institute)
"Simulations of Protein Folding and Dynamics - What is Missing?"
|
| 9:15 pm - 9:30 pm | Discussion |
| MONDAY |
| 7:30 am - 8:30 am | Breakfast |
| 8:30 am | Group Photo |
| 9:00 am - 12:30 pm | Mechanisms of Protein Folding and Assembly |
| 9:00 am - 9:10 am | Discussion Leader: Ben Schuler (University of Zurich)
"Introduction" |
| 9:10 am - 9:35 am | Stefano Piana (D. E. Shaw Research)
"Equilibrium Simulations of Slow and Fast Folding Proteins"
|
| 9:35 am - 9:45 am | Discussion |
| 9:45 am - 9:55 am | Caitlin Davis (Emory University)
"Dynamics of an Ultrafast Folding Subdomain in the Context of a Larger Protein Fold" |
| 9:55 am - 10:00 am | Discussion |
| 10:00 am - 10:30 am | Coffee Break |
| 10:30 am - 10:55 am | Vijay Pande (Stanford University)
"Simulating Protein Folding on the Millisecond Timescale"
|
| 10:55 am - 11:05 am | Discussion |
| 11:05 am - 11:30 am | Mikael Oliveberg (University of Stockholm)
"In-Cell Thermodynamics"
|
| 11:30 am - 11:40 am | Discussion |
| 11:40 am - 12:05 pm | Neil Ferguson (University College, Dublin)
"Connections Between the Energy Landscapes for Folding, Allostery and Virus Capsid Formation"
|
| 12:05 pm - 12:15 pm | Discussion |
| 12:30 pm | Lunch |
| 1:30 pm - 4:00 pm | Free Time |
| 4:00 pm - 6:00 pm | Poster Session |
| 6:00 pm | Dinner |
| 7:30 pm - 9:30 pm | Errors of Protein Folding |
| 7:30 pm - 7:40 pm | Discussion Leader: Joan Emma Shea (University of California, Santa Barbara)
"Introduction" |
| 7:40 pm - 8:05 pm | Margaret Sunde (University of Sydney)
"Interface-Triggered Formation of Functional Amyloid by Hydrophobin Proteins"
|
| 8:05 pm - 8:15 pm | Discussion |
| 8:15 pm - 8:40 pm | Rohit Pappu (Washington University in St Louis)
"Cis Modulation of Polyglutamine Aggregation in Huntingtin"
|
| 8:40 pm - 8:50 pm | Discussion |
| 8:50 pm - 9:15 pm | Jean Baum (Rutgers)
"The Accessible Conformations of N-Terminal Acetylated α-Synuclein: Implications for Aggregation"
|
| 9:15 pm - 9:25 pm | Discussion |
| TUESDAY |
| 7:30 am - 8:30 am | Breakfast |
| 9:00 am - 12:30 pm | Folding in the Cell |
| 9:00 am - 9:10 am | Discussion Leader: Lila Gierasch (University of Massachusetts Amherst)
"Introduction" |
| 9:10 am - 9:35 am | Gunnar von Heijne (University of Stockholm)
"Co-Translational Folding of Membrane Proteins"
|
| 9:35 am - 9:45 am | Discussion |
| 9:45 am - 9:55 am | Chris Waudby (University College London)
"Mapping the Co-Translational Folding Energy Landscape of the ddFln5 Immunoglobulin Domain" |
| 9:55 am - 10:00 am | Discussion |
| 10:00 am - 10:30 am | Coffee Break |
| 10:30 am - 10:55 am | Kingshuk Ghosh (University of Denver)
"Physical Limits and Heterogeneity in Cells and Proteomes: Model Prediction Using Protein Knowledge Bases"
|
| 10:55 am - 11:05 am | Discussion |
| 11:05 am - 11:30 am | Patricia Clark (University of Notre Dame, Indiana)
"Folding Proteins from One End to the Other"
|
| 11:30 am - 11:40 am | Discussion |
| 11:40 am - 12:05 pm | Martin Gruebele (University of Illinois)
"Folding: In Silico - In Vitro - In Vivo"
|
| 12:05 pm - 12:15 pm | Discussion |
| 12:30 pm | Lunch |
| 1:30 pm - 4:00 pm | Free Time |
| 4:00 pm - 6:00 pm | Poster Session |
| 6:00 pm | Dinner |
| 7:30 pm - 9:30 pm | Membrane Protein Folding |
| 7:30 pm - 7:40 pm | Discussion Leader: Susan Marqusee (University of California, Berkeley)
"Introduction" |
| 7:40 pm - 8:05 pm | Daniel Otzen (Aarhus University)
"Towards a Complete Description of the Folding Mechanism of the Integral Membrane Protein, GlpG"
|
| 8:05 pm - 8:15 pm | Discussion |
| 8:15 pm - 8:40 pm | Mark Sansom (University of Oxford)
"Membrane Protein/Protein and Protein/Lipid Interactions Probed via Multiscale MD Simulations"
|
| 8:40 pm - 8:50 pm | Discussion |
| 8:50 pm - 9:15 pm | Phil Thomas (UT Southwestern University)
"Molecular Pathologies of CF-Causing Mutations and Mechanisms of Membrane Protein Folding"
|
| 9:15 pm - 9:25 pm | Discussion |
| WEDNESDAY |
| 7:30 am - 8:30 am | Breakfast |
| 9:00 am - 12:30 pm | Protein Dynamics and Function |
| 9:00 am - 9:10 am | Discussion Leader: Peter Tompa (Free University of Brussels)
"Introduction" |
| 9:10 am - 9:35 am | Dorothee Kern (Brandeis University)
"Separated at Birth, the Evolution of Protein Dynamics over a Billion Years"
|
| 9:35 am - 9:45 am | Discussion |
| 9:45 am - 9:55 am | Lauren Metskas (Yale University)
"Conformation and Dynamics of the Troponin I C-Terminal Domain" |
| 9:55 am - 10:00 am | Discussion |
| 10:00 am - 10:30 am | Coffee Break |
| 10:30 am - 10:55 am | Jane Dyson (The Scripps Research Institute)
"Dynamics of Unfolded and Partly Folded Proteins"
|
| 10:55 am - 11:05 am | Discussion |
| 11:05 am - 11:30 am | Shoji Takada (Kyoto University)
"Functional Dynamics of Disordered Regions in Multi-Domain Proteins"
|
| 11:30 am - 11:40 am | Discussion |
| 11:40 am - 12:05 pm | Dave Thirumalai (University of Maryland)
"Towards a Theoretical Description of Function of a Molecular Motor"
|
| 12:05 pm - 12:15 pm | Discussion |
| 12:30 pm | Lunch |
| 1:30 pm - 4:00 pm | Free Time |
| 4:00 pm - 6:00 pm | Poster Session |
| 6:00 pm | Dinner |
| 7:00 pm - 7:30 pm | Business Meeting |
| Nominations for the Next Vice Chair; Fill in Conference Evaluation Forms; Discuss Future Site and Scheduling Preferences; Election of the Next Vice Chair |
| 7:30 pm - 9:30 pm | Forced Unfolding Dynamics |
| 7:30 pm - 7:40 pm | Discussion Leader: David Brockwell (University of Leeds)
"Introduction" |
| 7:40 pm - 8:05 pm | Matthias Rief (Technical University, Munich)
"Single Molecule Mechanics and Dynamics of Protein Folding"
|
| 8:05 pm - 8:15 pm | Discussion |
| 8:15 pm - 8:40 pm | Dominika Gruszka (University of Cambridge)
"Forced Unfolding of SasG"
|
| 8:40 pm - 8:50 pm | Discussion |
| 8:50 pm - 9:15 pm | Daniel Müller (ETHl, Zurich)
"Forced Unfolding, Refolding and Misfolding of Single Beta-Barrel Proteins into Lipid Membranes"
|
| 9:15 pm - 9:25 pm | Discussion |
| THURSDAY |
| 7:30 am - 8:30 am | Breakfast |
| 9:00 am - 12:30 pm | Protein Design and Evolution |
| 9:00 am - 9:10 am | Discussion Leaders: TJ Lane (Stanford University) and Adrian Nickson (University of Cambridge)
"Introduction" |
| 9:10 am - 9:35 am | Eugene Shaknovitch (Harvard University)
"Linking Protein Folding to Biology, One Mutation at a Time"
|
| 9:35 am - 9:45 am | Discussion |
| 9:45 am - 9:55 am | Shion An (University of California, Berkeley)
"Exploring the Energy Landscape Through Ancestral Proteins: A Ribonuclease H Study" |
| 9:55 am - 10:00 am | Discussion |
| 10:00 am - 10:30 am | Coffee Break |
| 10:30 am - 10:55 am | Yousif Shamoo (Rice University)
"Driving Protein Folding and Dynamics Through the Lens of Natural Selection"
|
| 10:55 am - 11:05 am | Discussion |
| 11:05 am - 11:30 am | Pat Jennings (University of California, San Diego)
"Probing the Interplay of the Folding and Functional Energy Landscapes of Designer Cytokines"
|
| 11:30 am - 11:40 am | Discussion |
| 11:40 am - 12:05 pm | Tanja Kortemme (University of California, San Francisco)
"Molecular Design and Functional Specificity - From Proteins to Cells"
|
| 12:05 pm - 12:15 pm | Discussion |
| 12:30 pm | Lunch |
| 1:30 pm - 4:00 pm | Free Time |
| 4:00 pm - 6:00 pm | Poster Session |
| 6:00 pm | Dinner |
| 7:30 pm - 9:30 pm | Protein Folding: Outlook and Challenges Ahead |
| 7:30 pm - 7:40 pm | Discussion Leader: Jose Onuchic (Rice University)
"Introduction" |
| 7:40 pm - 8:05 pm | Zan Luthey-Schulten (University of Illinois)
"Structural Intermediates in the Early Assembly of the Ribosomal Small Subunit"
|
| 8:05 pm - 8:15 pm | Discussion |
| 8:15 pm - 8:40 pm | Jeff Kelly (The Scripps Research Institute)
"From Studying Protein Folding and Misfolding In Vitro to Studying Folding and Misfolding in Living Organisms"
|
| 8:40 pm - 8:50 pm | Discussion |
| 8:50 pm - 9:15 pm | Charlie Brooks (University of Michigan)
"Merging Experiment, Theory and Simulation in Studies of Complex Folding Processes"
|
| 9:15 pm - 9:25 pm | Discussion |
| FRIDAY |
| 7:30 am - 8:30 am | Breakfast |
| 9:00 am | Departure |